Sequence
atgc intronic sequence ATGC exonic sequenceGATGACGGATATCCATAACTTGCAAGTGTTTGCATTGTACATGCAAAAAACAGATATCAAATTTGATCTATATTCAGTGACTAAGGAAATGGAAAAACAGgtggacttaatttctttgctagatttcttctttaatctatgtgaattatttgattcccacctgttttctttccgttttaaatgggtttgtttattagtag...
Basic information
species | Glycine max |
transcript | GLYMA05G02990.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G02990.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G24810.1 (Arabidopsis thaliana), 5'ss of exon 5
GATGACGGATATCCATAACTTGCAAGTGTTTGCATTGTACATGCAAAAAACAGATATCAAATTTGATCTATATTCAGTGACTAAGGAAATGGAAAAACAGgtggacttaatttctttgctagatttcttctttaatctatgtgaattatttgattcccacctgttttctttccgttttaaatgggtttgtttattagtag
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GATGGTTGATATCAGAAACTTGCAAATATTTGCATTATACATGCAGAAAACTGATATCAAATTTGACTTGTTCTCCATGACAAAGGAAATAGAGAAGCAGgtatatatcattcttt--ctatattttg---agggtatctggtaagaactttatagccgccaagtcactatcagtcct---tgttttcatttactag---
upper sequence: GLYMA05G02990.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G50330.2 (Arabidopsis thaliana), 5'ss of exon 4
GATGACGGATATCCATAACTTGCAAGTGTTTGCATTGTACATGCAAAAAACAGATATCAAATTTGATCTATATTCAGTGACTAAGGAAATGGAAAAACAGgtggacttaatttctttgctagatttcttc--tttaatctatgtgaattatttgattcccacctgttttctttccgttttaaatgggtttgtttattagtag
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GATGACAGACATAAGAAACTTGCAACTATTCGCCTTATACATGCAGAGAACAGATATCAAATTTGACCTGCATTCCATAACAAAGGAAATGGAGAAACAGgt--acttaattgatcttgttcctttgtgagacttatttttctccaagtcactgaaaactatgcgttttcttt---tttcaag-------------------
upper sequence: GLYMA05G02990.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g10260.t01 (Vitis vinifera), 5'ss of exon 5
GATGACGGATATCCATAACTTGCAAGTGTTTGCATTGTACATGCAAAAAACAGATATCAAATTTGATCTATATTCAGTGACTAAGGAAATGGAAAAACAGgtggacttaatttctttgctagatttcttctttaatctatgtgaattatttgattcccacctgttttctttccgttttaaatgggtttgtttattagtag---
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GATGACTGATATCCGTAATTTGCAAGCTTTTGCTTTATACATGCAGAAGACAGATATTAAATTTGACCTTTACTCTGTGACTAAAGAAATGGAAAAACAGgtatacattatttttgtttaggcagttgttgttgattaatagta--tattttatttatatat-ttatttatttatgtaaagtttgtgtgtgattttgttatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26045634|gb|CA783161.1|CA783161EST: CAGATATCAAATTTGATCTATATTCAGTGACTAAGGAAATGGAAAAACAG ATTGGATATGAA
genomic: CAGATATCAAATTTGATCTATATTCAGTGACTAAGGAAATGGAAAAACAGgtggacttaa ... gacattttagATTGGATATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGACGGATATCCATAACTTGCAAGTGTTTGCATTGTACATGCAAAAAACAGATATCAAATTTGATCTATATTCAGTGACTAAGGAAATGGAAAAACAGgtggacttaatttctttgctagatttcttctttaatctatgtgaattatttgattcccacctgttttctttccgttttaaatgggtttgtttattagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA