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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgtagtatttacttgaactagcttctttttgagctatttcttccatacatttcactttggattatcattaactaataatggcaatacatgttgtagatctaatatactgtcagactctgttgtttttgtctctgtgggttagctttctaatagtatctttttatgaatttgcag

Basic information

species Glycine max
transcript GLYMA05G02740.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02740.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgta-gtatttacttgaactag-cttctttttgagctatttc----ttccatac-atttcactttggattatcattaactaataat-ggcaatacatgttgtagatctaatatactgtcag-actctgttgtttttgtctctgtgggttagctttctaatagtatctttttatgaatttgcag-----
|||||||||||||| |||||||| |||||||||| ||| |||||||| || ||||  || || || ||| ||| ||||||||| ||||||||||||||||||||||    | || |||    ||  ||| ||      ||| ||      || | |  |||   |  |  |||          |  | | |  |    ||| | |   |     || || | || | |   |  |   |  |    |  ||| | ||    ||  |||||| |    ||| ||        
GGACCAAGCTTATATGATTTTCTGCGGAAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGGTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttccttctgttactcttattaccacactaattagcagatctagattattcttccataaattgcatgctgtcatcagttgatagctgatgctttctttgcttcatccttttaggaatacctaatacctaacctgctttgtttgtttatatatt-tatcttctctgtaatgtgtgttgcag

upper sequence: GLYMA05G02740.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgta-gtatttacttgaactagcttctttttgagctatttcttccatacatttcactt-tggattatcattaactaataatggcaatacatgttgtagatctaatatactgtcagactctgttgtttttgtctctgtgggttagctttctaat-agtatctttttatgaatt--tgcag
|||||||||||||| ||||||||  ||||||||||||| |||||||| || ||||  || || || ||| ||| ||||||||| ||||||||||||||||||||||    | ||  ||  | || |  | |  ||  ||||       |||||||    || || ||||||  |     ||    ||    ||| |  |  ||     || ||   |  |   |  || | |  |    || | |   ||| || | |   ||| | | | |  |  |||||
GGACCAAGCTTATATGATTTTCTGAGGAAAAACAATTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttctttctattacc--cctcctgcactataatgcatatacattagttttgtgcattatctgtgctgcattgcagcctgtcat-taatccattactcatgcttgtactccagggagtatctaacatcatgtgatgtttttgtatttaccctctctctgtaatgtgttgcag

upper sequence: GLYMA05G02740.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G179308_T01 (Zea mays), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgta-gtatttacttgaactagcttctttttgagctatttcttccatacatttcactttggattatcattaactaataatggcaatacatgttgtagatctaatatactg-tcagactct-gttgtttttgtctctgtgggttagctttctaat-agtatctttttatgaatt--tgcag
|||||||||||||| |||||||| ||| |||||| ||| |||||||| || ||||  || || || ||||||| ||||||||| ||||||||||||||||||||||    | ||  |   | ||  |   |  ||  ||||       |||||||    |||   ||   ||  |     |         | | |  |  ||| |   ||||  |||  ||   |   | | |  |    |||| |   | | || | |   ||| | | | |  |  |||||
GGACCAAGCTTATATGATTTTCTGCGGGAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGATTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttcttcctatta--tcgctcctgcactataatgcatatacatta-gtttttttttgcaatatatgtgcagcattgtagcctatcattaatccatattactactcatgcttaaggaatatctaacatcatgggatgtttatgtatttaccctctctctgtaatgtgttgcag

upper sequence: GLYMA05G02740.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G24740.1 (Arabidopsis thaliana), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgtagtatttacttgaactagcttctttttgagctatttcttccatacatttcactttggattatcattaactaataatggcaatacatgttgtagatctaatatactgtcagactctgttgtttttgtctctgtgggttagctttctaatagtatctttttatgaatttgcag
||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||| ||||||||| ||||||||||||||| ||| |       ||  ||||||    |||  |  ||  | |||||   | ||  || |   |    | | |      |||||           | ||   | | |   || | | ||||  | ||| |  |  |  |||||     | ||| ||| ||  |||||||
GGATCGAGTTTATACGATTTTCTTCGGAAAAACAATTATCGCTCCTTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTCTTGGAATGTGTAGCATgtgtgtagtctttgc-------ag--tcttttcattctacatgctc-gtgcatttttatctgagtt-ttgcttgtcactgagatggttacat----------cattagtttttgaatttcagctcttttcatttct-tatggcaattttct-----tgtctatttttgt-tttgcag

upper sequence: GLYMA05G02740.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgtagtatttacttgaactagcttctttttgagctatttcttccatacatttcactttggattatcattaactaataatggcaatacatgttgtagatctaatatactgtcagactctgttgtttttgtctctgtgggttagctttctaatagtatctttttatgaatttgcag
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||  |||||   |||| || ||||| |      ||    || | |||  |||| |  |||    | ||  ||       ||| ||||| |  |||| |||  ||| |                                                              
GGACCAAGCTTATACGATTTTCTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATgtgtgtagtaaatacttttgctagtttttttttcaa-----tccataatgcgtttgccttttgtgtatt-ccatctctta-------tac-tgttgaatgtctactat-ttgtaa--------------------------------------------------------------

upper sequence: GLYMA05G02740.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S425_6V6.2 (Physcomitrella patens), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgtagtatttacttgaactagcttctttttgagctatttcttccatacatttcactttggattatcattaactaataatggcaatacatgttgtagatctaatatactgtcagactctgttgtttttgtctctgtgggttagctttctaatagtatctttttatgaatttgcag
|| ||||| || |||||||||||||| ||||||||||||||  | ||| |    |||||||| || ||  |||||   ||||| ||||| | | |||| |||  ||  ||||   ||| |      | |||   |   ||       |||   ||  | |  |  |||   |   || |  |      |    |   | || | || |                                                                     
GGGCCAAGTTTGTACGATTTTCTTCGAAAAAACAATTATCGACCGTTTTCTGCAGATCTTGTTCGAGATTTTGGCCGCCAACTCTTGGAGTCTGTAGCTTgtaagtcatatt---ttgtatgtatatatttgcaaataat-------atatgattttcctcagtgtatggatgtgtatttcttatctgattcatcagaaatatgatctgt-------------------------------------------------------------------

upper sequence: GLYMA05G02740.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S100_121V6.1 (Physcomitrella patens), 5'ss of exon 8
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgtagtatttacttgaactagcttctttttgagctatttcttccatacatttcactttggattatcattaactaa--taatggcaatacatgttgtagatctaatatactgtcagactctgttgtttttgtctctgtgggttagctttctaatagtatctttttatgaatttgcag
||||| |||||||||||||| ||||| ||||||||||||||  ||||| |    ||||| || || ||  |||||   || || ||||| |   |||| |||| |      |||||||    | ||  |  ||||   || | |  | || |||| ||    || |   |||  |  |  || ||    || |||||||  |     || | |      |    |||||   |                                              
GGACCGAGCTTATACGATTTCCTTCGAAAAAACAATTATCGACCATTTTCTGCAGATCTCGTTCGCGACTTTGGCCGCCAGCTGTTGGAGTCCGTAGCTTgtgag------ttacttgtgggatctgttcattga---atatgtcgcgta-atttgacagcagaat-caattggcggaattattgatgttatatgttgtgaaagcggta-atttatgttcctgattgttgcag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394814|gb|EV264685.1|EV264685
EST:     CATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCAT                         TCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
genomic: CATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
EST: gi|21994008|gb|BQ785536.1|BQ785536
EST:     CATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCAT                         TCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
genomic: CATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
EST: gi|58016463|gb|CX703205.1|CX703205
EST:     ACAACTATTGGAATGTATAGCAT                         TCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
genomic: ACAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC