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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGAGTACGATCTGGACCAATCCCTAGACGCTCTCTGTGGTGTTGATGTCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATGgtaagttgttctggttgttcaccttttattttattatcaaaatgcctgcaatttgaagttctttaccttctaatcccgcctcttactaagcaatttgttcaattggattctctcttttgattagtgattgggtgtgtgtgcag

Basic information

species Glycine max
transcript GLYMA05G02630.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6073009|gb|AW102396.1|AW102396
EST:     TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATG                         GGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
genomic: TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATGgtaagttgtt ... gtgtgtgcagGGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
EST: gi|21638503|gb|BM139549.1|BM139549
EST:     TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATG                         GGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
genomic: TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATGgtaagttgtt ... gtgtgtgcagGGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
EST: gi|207784322|gb|GD758969.1|GD758969
EST:     CTTGAAGAGTTACAGGAGATG                         GGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
genomic: CTTGAAGAGTTACAGGAGATGgtaagttgtt ... gtgtgtgcagGGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
EST: gi|37995013|gb|CF806602.1|CF806602
EST:     TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATG                         GGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
genomic: TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATGgtaagttgtt ... gtgtgtgcagGGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
EST: gi|254318360|gb|GR832528.1|GR832528
EST:     TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATG                         GGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
genomic: TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATGgtaagttgtt ... gtgtgtgcagGGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
EST: gi|254314601|gb|GR829594.1|GR829594
EST:     TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATG                         GGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
genomic: TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATGgtaagttgtt ... gtgtgtgcagGGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
EST: gi|208153483|gb|GD951414.1|GD951414
EST:     TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATG                         GGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAA-CAATGGA
genomic: TCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATGgtaagttgtt ... gtgtgtgcagGGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
EST: gi|10254838|gb|BE822604.1|BE822604
EST:     GTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATG                         GGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA
genomic: GTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATGgtaagttgtt ... gtgtgtgcagGGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATGAGTACGATCTGGACCAATCCCTAGACGCTCTCTGTGGTGTTGATGTCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATGgtaagttgttctggttgttcaccttttattttattatcaaaatgcctgcaatttgaagttctttaccttctaatcccgcctcttactaagcaatttgttcaattggattctctcttttgattagtgattgggtgtgtgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG