Sequence
atgc intronic sequence ATGC exonic sequenceGGTTGATCTGGACTTTGAGCACAATGTGAGGCCTGCTCCTGTAATCACTGAAGAAGTTACAGCTTCAATTGAGGATATAATCAAGAAAAGGATTATTGAGgtaactaatatgttgaactgatatggtttggacttcaacgataatacataaagttatttacatgaatggaagctgatatatagatggcaaccaattcctg...
Basic information
species | Glycine max |
transcript | GLYMA05G02340.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G02340.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os11g04200.1 (Oryza sativa), 5'ss of exon 5
GGTTGATCTGGACTTTGAGCACAATGTGAGGCCTGCTCCTGTAATCACTGAAGAAGTTACAGCTTCAATTGAGGATATAATCAAGAAAAGGATTATTGAGgtaactaatatgttgaact----gatatggtttggacttcaacgataatacataaagttatttacatgaatggaagctgat-atatagatggcaaccaattcctg------------
|| || || || |||||||||||||| || ||||| || ||||||||||| ||||| || ||||| |||| || || || |||||||| || || |||||| | |||| | || |||| | || | || | |||| | || ||| | ||| || || | | |
AGTGGACCTTGATTTTGAGCACAATGTAAGACCTGCCCCAGTAATCACTGAGGAAGTCACTGCTTCTCTTGAAGAGATGATAAAGAAAAGAATAATAGAGgtatgtgtgttgtttcctttttcgacatggcataatgggcagttttgcaacttg--gttaactttgtggccttgtgctacttatactgagggagctttacttgttgattccctgtag
upper sequence: GLYMA05G02340.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g04010.1 (Oryza sativa), 5'ss of exon 5
GGTTGATCTGGACTTTGAGCACAATGTGAGGCCTGCTCCTGTAATCACTGAAGAAGTTACAGCTTCAATTGAGGATATAATCAAGAAAAGGATTATTGAGgtaactaatatgttgaact----gatatggttt---ggacttcaacgataatacataaagttatttacatgaatggaagctgatatatagatggcaaccaattcctg---------------------------------------------------------
|| || || || |||||||||||||| || ||||| || ||||||||||| ||||| || ||||| |||| || || || |||||||| || || |||||| | |||| | || |||| | || | | | | | || || ||||| |||| | | | ||| | ||| ||
AGTGGACCTTGATTTTGAGCACAATGTAAGACCTGCCCCAGTAATCACTGAGGAAGTCACTGCTTCTCTTGAAGAGATGATAAAGAAAAGAATAATAGAGgtatgtgtgttgtttcctttttggacatggcataatgggcagttttgcaacttggttaactttgttacagtgctggagaataaatttattctggacatatatttttgtatttgtggccttgtgctacttatactgagggagctttacttgttgattccatgtag
upper sequence: GLYMA05G02340.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G005308_T01 (Zea mays), 5'ss of exon 7
GGTTGATCTGGACTTTGAGCACAATGTGAGGCCTGCTCCTGTAATCACTGAAGAAGTTACAGCTTCAATTGAGGATATAATCAAGAAAAGGATTATTGAGgtaactaatatgttgaactgatatggtttggacttcaacgataatacataaagttatttacatgaatggaagctgatatatagatggcaaccaattcctg-------
|| || || || |||||||||||||| || ||||| |||||||| || || ||||| |||||||| |||| || || || |||||||| || |||||| | | ||| | | | |||| | | || | || | | | | | || | | || | |||| |||| |||
AGTGGACCTTGATTTTGAGCACAATGTAAGACCTGCCCCTGTAATAACCGAGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgcttggtttttccccttttttttgctcatgtg-aatggtgttcaacttcagcttggt-agtg-----tagtgcatttgttgcaatcaatgtctgatgatca
upper sequence: GLYMA05G02340.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G66540.1 (Arabidopsis thaliana), 5'ss of exon 5
GGTTGATCTGGACTTTGAGCACAATGTGAGGCCTGCTCCTGTAATCACTGAAGAAGTTACAGCTTCAATTGAGGATATAATCAAGAAAAGGATTATTGAGgtaactaatatgttgaactgatatggtttggacttcaacgataatacataaagttatttacatgaatggaagctgatatatagatggcaaccaattcctg
|||||| | || ||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| |||| ||| | ||||||| || || ||||||||||||| | ||| | | | || || | || | | | | | | | ||| ||||| || | || | | | |
AGTTGATTTAGATTTTGAGCACAATGCCAGGCCTGCTCCTGTAATCACAGAAGAAGTCACAGCCTCACTTGAAGATTTGATCAAGAGCAGAATCATTGAGgtaactact-tgtggcagtaatttgtaacaaaggtctcccttgtttcttcctggt-tttgcatgactg--atctttttactctttag-------------
upper sequence: GLYMA05G02340.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g08620.t01 (Vitis vinifera), 5'ss of exon 5
GGTTGATCTGGACTTTGAGCACAATGTGAGGCCTGCTCCTGTAATCACTGAAGAAGTTACAGCTTCAATTGAGGATATAATCAAGAAAAGGATTATTGAGgtaactaatatgttg-aactgatatggtttggacttcaacgata----atacataaagttatttacatgaatggaagct-gatatatagatggcaaccaattcctg
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AGTTGATCTAGATTTTGAGCACAATGTGAGACCTCCTCCTGTAATCACAGAGGAGGTTACAGCATCCCTTGAAGATTTGATCCAAAAAAGAATCCTTGAGgtaaactccatcttctaattgatatatttgaaaacagcaggacataaaatgctgaaaacacaatagttttgtaggtgcttgttatggggatgatcataaa------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23727322|gb|BU761689.1|BU761689EST: AAGAAGTTACAGCTTCAATTGAGGATATAATCAAGAAAAGGATTATTGAG GGGCATTTTAATGATGTTCAAAGGGTTCTTAAATTGCCACCTAAAGGGCCT
genomic: AAGAAGTTACAGCTTCAATTGAGGATATAATCAAGAAAAGGATTATTGAGgtaactaata ... tttactatagGGGCATTTTAATGATGTTCAAAGGGTTCCTAAATTGCCACCTAAAGGGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTGATCTGGACTTTGAGCACAATGTGAGGCCTGCTCCTGTAATCACTGAAGAAGTTACAGCTTCAATTGAGGATATAATCAAGAAAAGGATTATTGAGgtaactaatatgttgaactgatatggtttggacttcaacgataatacataaagttatttacatgaatggaagctgatatatagatggcaaccaattcctg
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA