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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatctataaattggattttgtgctctacatttatcttactctttctgtgatttcattgtcttttttaattaatggaacattagttatatttggatatagttatagtctcattggggttttcattctactgcag

Basic information

species Glycine max
transcript GLYMA04G43390.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207735715|gb|GD713050.1|GD713050
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|193614874|gb|FK562856.1|FK562856
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|193682413|gb|FK624617.1|FK624617
EST:     CGAGGCTTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCGTCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: CGAGGC-TTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|208060289|gb|GD859963.1|GD859963
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATT
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATT
EST: gi|14012147|gb|BG727069.1|BG727069
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|193681609|gb|FK623331.1|FK623331
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|193393375|gb|FK359367.1|FK359367
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAG-TGGTCTCTTGTT
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTT
EST: gi|193439674|gb|FK405877.1|FK405877
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTT
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTT
EST: gi|31561978|gb|CD487816.1|CD487816
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|254326214|gb|GR840806.1|GR840806
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|193398710|gb|FK362490.1|FK362490
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTG
EST: gi|298187350|gb|HO034499.1|HO034499
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
EST: gi|120533661|gb|EH261794.1|EH261794
EST:     GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACT                         GCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatcta ... tctactgcagGCAGTGGCAGGTGGTCTCTTGTTGAAACTTCCATTCAACACCATATTTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGCGAGGCTTATTCTGAAACAGTGAAGAGGGCTATCGTTGATCATCATACTgtatgatctataaattggattttgtgctctacatttatcttactctttctgtgatttcattgtcttttttaattaatggaacattagttatatttggatatagttatagtctcattggggttttcattctactgcag

- - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - AAGAGG