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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAACAACTTCTTCAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccagttaggtcaactgcttaaaattatcaagacaaaatttggtgtgaatcaggacagaattatagcatcaccttgaaaaaatagtgtaggggaa...

Basic information

species Glycine max
transcript GLYMA04G43340.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796823|gb|AW782217.1|AW782217
EST:     CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG                         TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
EST: gi|213615386|gb|DB965651.1|DB965651
EST:     CAATTGGAACGGGAGAAGGGGATTGTTATCAGATTCATGATTGGTCACAG                         TGCAACTTCCAACAGCAT
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCAT
EST: gi|23052841|gb|BU577332.1|BU577332
EST:     CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG                         TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
EST: gi|151395197|gb|EV265068.1|EV265068
EST:     CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG                         TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
EST: gi|31561426|gb|CD487264.1|CD487264
EST:     CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG                         TGCAACTTCCAACAG
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAG
EST: gi|209720190|gb|BW674528.1|BW674528
EST:     CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG                         TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTC
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTC
EST: gi|16104724|gb|BI892464.1|BI892464
EST:     CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG                         TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
EST: gi|192305500|gb|FG994294.1|FG994294
EST:     CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG                         TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA
genomic: CAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccag ... gtcatcacagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGACTCAGAAGAAGCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAACAACTTCTTCAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccagttaggtcaactgcttaaaattatcaagacaaaatttggtgtgaatcaggacagaattatagcatcaccttgaaaaaatagtgtaggggaa

- - - - - - - - - - - -  GGAGAA