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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTCTTTCCACAATTACAGAATGTGGTCATTCTTAGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagcctcagcatcatcataaaattaaagcaaatcatataatgattgctaacacatgtgatataagtattattgttgccaattttgtgttcttcaattaatattctgtgtgtttctctgaag

Basic information

species Glycine max
transcript GLYMA04G43150.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G43150.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G77690.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCTTCTTTCCACAATTACAGAATGTGGTCATTCTTAGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagcctcagcatcatcataaaattaaagcaaatcatataatgattgctaacacatgtgatataagtattattgttgccaattttgtgttcttcaattaatattctgtgtgtttctctgaag
 ||||| ||||||||||| ||||| ||||||||| | || ||||  ||||||||||||||| | |||||| | ||||| ||||| ||    ||||||||||| |  | | |  | |   |      |  | || || |||| ||  |  || ||  |    || ||  |      | | |||||  |||| ||  |   ||                                         
TCCTTCCTTCCACAATTATAGAATTTGGTCATTCCTCGGACTCGCTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCTTCATGGCCAGgtcattataattaacacaaatcttgttttg-attattataagatatagacatatagtcc--tggttattgttg--tttaatatatttatttttcatataaaaaag-------------------------------------

upper sequence: GLYMA04G43150.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 4
CCCTTCTTTCCACAATTACAGAATGTGGTCATTCTTAGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagc-ctcagca-tcatcataaaattaaagcaaatcatataatgattgctaacacatgtgatataagtattattgttgccaattttgtgttcttcaattaatattctgtgtgtttctctgaag
 ||||| ||||| ||||||||||| |||||||||||||||||  |||||||||| |||||| | |||||| | ||||| |||||| ||| |||||| ||||||   |    |  || ||||  |   ||| || | |   | || || ||  || ||  |||||      |  | | | ||||| |   |||     |    |||  ||  ||      | || |       | || | |||||
TCCTTCATTCCATAATTACAGAATTTGGTCATTCTTAGGCCTTATGATGACCACCTACACTTCTTGGTATCTAACCATTGCTTCCTTTATCCATGGGCAGgtatgtatttaccttaattagctgtattcatcacttagttttaatttcaaataattcccataat--cccatcccccctttgatacattgatt-----tatttattaagtaatcccatgctgattt-------gcttgtttgaag