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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGAAGCCTGGGTGTGTTCAGAACACCTGTGCACACAGAGCATGTCCTCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagttggtgaatgatgactctttacaccaacttaaggaaatttttgcttcaatacatgattatatcctagcaatgagttatatgcactggttcat...

Basic information

species Glycine max
transcript GLYMA04G42840.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G42840.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 5
GATGGGAAGCCTGGGTGTGTTCAGAACACCTGTGCACACAGAGCATGTCCTCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagttggtgaatgatgactctttacaccaacttaaggaaatttttgct-tcaatacatgattatatcctagcaatgagttatatgcactggttcat--
|||||||  ||||| |||||||||||||| ||||| |||||||| || ||||| || ||||| || || | ||||||| | ||||||||||||| ||||||| || |    |  | |  | |      |   ||  ||  | |   || |||| |   ||||   | || | | |   || || ||     |  | |  ||  
GATGGGAGACCTGGATGTGTTCAGAACACATGTGCTCACAGAGCCTGCCCTCTTCATCTTGGCTCAGTTAGTGAGGGTAGAATCCAATGCCCTTTCCATGgtaagaaaaaagaaact--ttatatgaaatttcattttg-gcacgcttctgctgtttttacaatctgattttcaaagcatcagctagcactatggctatatga

upper sequence: GLYMA04G42840.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 5'ss of exon 5
GATGGGAAGCCTGGGTGTGTTCAGAACACCTGTGCACACAGAGCATGTCCTCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagt--agttgg---tgaatgatgactctttacaccaacttaaggaaatttttgct----tcaatacatgattatatcctagcaatgagttat-----atgcactggttcat--------------------------
|||||||  ||||| ||||||  |||||| ||||| |||||||| || ||||| || ||||| || || ||||||||  | ||||||||||||||||||||| ||   ||   |   |  ||||    || || |  ||   |   | | || || ||    ||   | ||||  || | | | ||  |||   |     | | | |  ||||                           
GATGGGAGACCTGGATGTGTTATGAACACATGTGCTCACAGAGCTTGCCCTCTTCATCTTGGCTCAGTTAATGAGGGCAGAATCCAATGCCCTTACCATGgtaagaaaagacagctttacatgaactttcatttctgcatgcttccgcatttatttctgaagtcttcagatgaaaatttgccaacagagagaagttgcgaaagtagtatttcagtttttttttgttttcataaccttcag

upper sequence: GLYMA04G42840.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 5
GATGGGAAGCCTGGGTGTGTTCAGAACACCTGTGCACACAGAGCATGTCCTCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagttggtgaatgatgactctttacaccaacttaaggaaatttttgcttcaatacatgattatatcctagcaatgagttatatgcactggttcat---
|| || | ||||||||||||||||||||| ||||| ||||| || || || || || |||||||| ||||| |||||| | ||||| ||||||||||||||| |||                    | | |    ||   ||  | | |  |||   | ||  | |    ||||    ||  || | | | |||  | |    
GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcctactgtctgaattaggtcagagattctcggggttactgtatcttgttttcagaagtgcg-cctact--tgttttgtttaccctgtctgaatta

upper sequence: GLYMA04G42840.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G171390_T05 (Zea mays), 5'ss of exon 5
GATGGGAAGCCTGGGTGTGTTCAGAACACCTGTGCACACAGAGCATGTCCTCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagttggtgaatgatgactctttacaccaacttaaggaaatttttgcttcaatacatgattatatcctagcaatgagttatatgcactggttcat
|| || | ||| ||||||||||||||||| || || ||||| ||||| || || || |||||||| ||||| |||||  | ||||| ||||||||||||||| | ||    |  ||  || | ||  |  ||| ||| ||  ||   ||      ||| || | |||     || |    |  ||||   |    |||| 
GACGGAAGGCCCGGGTGTGTTCAGAACACATGCGCCCACAGGGCATGCCCGCTGCATCTTGGTTCAGTGAACGAGGGCAGGATCCAGTGCCCTTACCATGgtaattaagaaggcaa--atcagtcgatcgacctactgaaaaaacaatt------aatgcacggttaacatataacgcctatatataataatc--ttcag

upper sequence: GLYMA04G42840.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 5
GATGGGAAGCCTGGGTGTGTTCAGAACACCTGTGCACACAGAGCATGTCCTCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagttggtgaatgatgactctttac-accaacttaaggaaatttttgcttcaatacatgattatatcctagcaatgagttatatgcactggttcat
|| ||||| || || ||||| | ||| || ||||| || ||||||||||||||  | |||||  | ||||| ||||| ||||| ||||| || ||||||||||||||  |  |   | |     |  |      |||    |  ||    |   | | || ||| | || |  |||                         
GACGGGAAACCAGGATGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAGGGACGTATTCAATGTCCGTACCATGgttagtaactctttctttagtctacaatgttgataacaagtgagaaaccatatcttattaaatg-tgattttgtag-------------------------

upper sequence: GLYMA04G42840.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
GATGGGAAGCCTGGGTGTGTTCAGAACACCTGTGCACACAGAGCATGTCCTCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagttggtgaatga------tgactctttacaccaact--taaggaaatttttgcttcaatacatgattatatcctagcaatgagttatatgcactggttcat------------------------------
|||||||| ||||| ||||| |  |||||||| || || |||||||| ||||| || ||||| || || || ||||||||||||||||| |||||||||||||||||   ||  || ||        |   |||||      |  |||  | |          |||  || | ||   | ||  | | |   ||||    | | ||||                              
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataagcaaaagtttacctgttttgctaataagaacagatgacaaatcaattagtaatgcataa-agtaaaaaatatttgtttgctcatgtggaaatttttgtgatggatgaacttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311763|gb|BG405414.1|BG405414
EST:     TCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATG                         GCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCGTCTACTCGAC
genomic: TCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagtt ... ttgatgttagGCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCGTCTACTCGAC
EST: gi|15199646|gb|BI423937.1|BI423937
EST:     TCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATG                         GCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCGTCTACTCGAC
genomic: TCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagtt ... ttgatgttagGCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCGTCTACTCGAC
EST: gi|23725255|gb|BU760578.1|BU760578
EST:     TCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATG                         GCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCGTCTACTCGAC
genomic: TCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagtt ... ttgatgttagGCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCGTCTACTCGAC
EST: gi|17022892|gb|BM093926.1|BM093926
EST:     TCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATG                         GCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCGTCTACTCGAC
genomic: TCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagtt ... ttgatgttagGCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCGTCTACTCGAC