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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGTGGAGTTCATGCCCTTCTTCTTGTCTCTGTTTGTTTTTCTCTGCGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcactttgcaattttaacttacaatggtacatagtttcatatttattattggcagtgcagtggcatagacaataaaatgttacatagtttcatagtttcatattcatgtatggtttttcag

Basic information

species Glycine max
transcript GLYMA04G42040.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G42040.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G21460.1 (Arabidopsis thaliana), 5'ss of exon 5
GAGTGTGGAGTTCATGCCCTTCTTCTTGTCTCTGTTTGTTTTTCTCTGCGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcactttgcaattttaacttacaatggtacatagtttcatatttattattggcagtgcagtggcatagacaataaaatgttacatagtttcatagtttcatattcatgtatggtttttcag
|||||| ||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| |||||  ||| ||||||  | || |||||||| ||||||||||||||| |     ||||||   |||    || |   |  |||  ||  ||| |            |  | | |    |    |||| |  ||                                  
GAGTGTAGAGTTTATGCCATTCTTTTTGTCACTCTTTGTCTTCCTCTGTGGTACTTCGTGGTTCGTCTATGGTCTAATCGGTCGTGACCCTTTTGTTGCAgtaagtta-----caatttctccttcttgtgttgttttctttggtaaatatcaaaactttgtttctaactttgggtttttgttgttgcgaag----------------------------------

upper sequence: GLYMA04G42040.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g15330.t01 (Vitis vinifera), 5'ss of exon 5
GAGTGTGGAGTTCATGCCCTTCTTCTTGTCTCTGTTTGTTTTTCTCTGCGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcactttgcaatt-ttaacttacaatggtacatagtttcatatttatta-ttggcagtgcagtggcatagacaataaaatgttacatagtttcatagtttcatattcatgtatggtttttcag
|||||| |||| ||||||||||||||| || ||||| || || |||||||| |||||||||||| ||||||| || || ||    ||||| ||||| || ||||| | ||| |   || |  |  |       ||  | ||     |||    | || | |||  | |         |     |  ||| || ||     ||                          
GAGTGTAGAGTACATGCCCTTCTTCTTATCACTGTTCGTGTTCCTCTGCGGTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaag-cgcttggtccttgtcgaggtttgcc--tatgtggtggggaattacccaatttgtagtttaatca-------agcgggacattatatggtgctgcag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208336154|gb|GE134253.1|GE134253
EST:     GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
EST: gi|16345749|gb|BI971344.1|BI971344
EST:     GCACGTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTATAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
EST: gi|208279476|gb|GE073655.1|GE073655
EST:     CCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
genomic: CCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
EST: gi|208322785|gb|GE123008.1|GE123008
EST:     GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
EST: gi|192305145|gb|FG994695.1|FG994695
EST:     TTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
genomic: TTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT
EST: gi|192305144|gb|FG994694.1|FG994694
EST:     GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTGGGT-CTGCTTTGGGGACA-CGCA-CTAATATTATAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggtttttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAACGCAACTAATATTATAT