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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaacttgcattatctcatcttttgactggacaggaatgttgaatgaaataaatatgaattttttcactaataagcagagactctgtcagatattc...

Basic information

species Glycine max
transcript GLYMA04G41130.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41130.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g21180.2 (Oryza sativa), 5'ss of exon 6
GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaacttgcattatctcatcttttgactggacaggaatgttgaatgaaataaatatgaattttttcactaataagcagagactctgtcagatattc
|| || ||||||||||| |||||||||||  | || ||||| | |||||| ||||||||||| |||||||||||   |         | |     | |           |  |   | || || |   |  |  | | |    |     |   ||        | || 
GCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGATGTCAGCAAAGGACATgtaagatcttattgaaggattaatcactaatcattacttcctactctgtaaattagagcggtctagtgtgaacttttgtttgtttcttcactcagtcttt

upper sequence: GLYMA04G41130.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G180990_T02 (Zea mays), 5'ss of exon 6
GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaac-ttgcattatctcatcttttgactggacaggaatgttgaatgaaa----taaatatgaattttttcactaataagcagagactctgtcagatattc
|| || ||||||||||||||||| || || || || ||||| | |||||| ||||||||||||||||||||||   |  |      | |    |  |    | ||   | | | |||  ||      ||  |  ||   |  |||| ||   |   | ||| |     | || 
GCTATAATGGCTGAAGGAAAACAACACGCCCTGGCAATTGGATATACAAAGATGTCAGCAAAAGACATgtaagtttcactctgaagtattgattaatattggcactcaagtctcgaagtaatactccaagcacaaagcctg-cactcatgctc---gtctccgcactctttt-

upper sequence: GLYMA04G41130.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0060g01920.t01 (Vitis vinifera), 5'ss of exon 6
GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaaga-aacttgcattatctcatcttttgactggacaggaatgttgaatgaa-ataaatatgaatttttt--cactaataagcagagactctgtcagatattc
||||| |||||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||  ||  | |||||||     || |   || |||| | |   | ||    ||   ||||  ||| ||   | | | ||  || ||     | | | |   
GCCATAATGGCTGAAGGAAAGCAACATGCTCTTGCTATTGGGTTCACAAAAATGTCAGCAAAAGACATgtaagttaaactacattatcatgctttct---tgtacagaagtcaggcatttgtatttgtatgtttttgttaatatttacaaagagggaaagcataatacaac-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193363966|gb|FK333048.1|FK333048
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|58016274|gb|CX703016.1|CX703016
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|298176132|gb|HO015537.1|HO015537
EST:     AAACAGCATGCTCTCGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCGATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|193566211|gb|FK524616.1|FK524616
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATCATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|208047854|gb|GD845245.1|GD845245
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|151410220|gb|EV280035.1|EV280035
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|151413172|gb|EV282980.1|EV282980
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|193364720|gb|FK330135.1|FK330135
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|208333078|gb|GE127383.1|GE127383
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|193691396|gb|FK633643.1|FK633643
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGCCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|10847978|gb|BF070551.1|BF070551
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         TAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|298176588|gb|HO023175.1|HO023175
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTT
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTT
EST: gi|208134219|gb|GD931354.1|GD931354
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|193414426|gb|FK379218.1|FK379218
EST:     GGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: GGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
EST: gi|151395221|gb|EV265092.1|EV265092
EST:     AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACAT                         AAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA
genomic: AAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATgtaagaaact ... gttgtttcagAAAAGCAATCAATAAGGGCATTGGGGTTGACAACTTGCATTATCTCAATGA