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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATGGGGCATTATGTGGCCATTAATCAGGGGACTAAAAGGGGAATGGTTTCCTGCAAGCATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAGgtctaaattttgttataactaaaggattctatcacagctatataatatttagtttagttctttcaatttcattccttgattttttcttttgcttgctgcag

Basic information

species Glycine max
transcript GLYMA04G41020.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193384047|gb|FK349660.1|FK349660
EST:     TTCCTGCAAGCATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAG                         GTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
genomic: TTCCTGCAAGCATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAGgtctaaattt ... cttgctgcagGTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
EST: gi|193668875|gb|FK611111.1|FK611111
EST:     CATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAG                         GTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
genomic: CATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAGgtctaaattt ... cttgctgcagGTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
EST: gi|151401655|gb|EV271468.1|EV271468
EST:     TTCCTGCAAGCATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAG                         GTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
genomic: TTCCTGCAAGCATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAGgtctaaattt ... cttgctgcagGTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
EST: gi|193733132|gb|FK668349.1|FK668349
EST:     CATAGCAGAGNGTAGCATGAAGAGTCTTAATGGTTATAAG                         GTTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGT
genomic: CATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAGgtctaaattt ... cttgctgcagG-TTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGT
EST: gi|193578369|gb|FK537589.1|FK537589
EST:     CAAGCATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAG                         GTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
genomic: CAAGCATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAGgtctaaattt ... cttgctgcagGTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
EST: gi|193562701|gb|FK517846.1|FK517846
EST:     CCTGTAAGCATTAGTCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAG                         GTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
genomic: CCTGCAAGCA-TAG-CAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAGgtctaaattt ... cttgctgcagGTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
EST: gi|193513122|gb|FK470950.1|FK470950
EST:     CATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAG                         GTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
genomic: CATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAGgtctaaattt ... cttgctgcagGTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
EST: gi|193579288|gb|FK538464.1|FK538464
EST:     CATAGCAGAGAGTAGCATGAAGAGTCTTAATGG-TATAAG                         GTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
genomic: CATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAGgtctaaattt ... cttgctgcagGTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
EST: gi|26045712|gb|CA783212.1|CA783212
EST:     TTCCTGCAAGCATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAG                         GTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC
genomic: TTCCTGCAAGCATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAGgtctaaattt ... cttgctgcagGTTTTTATTTCCATTGCTTTGATTCTTGGTGATGGGCTTTACAATTTTGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCATGGGGCATTATGTGGCCATTAATCAGGGGACTAAAAGGGGAATGGTTTCCTGCAAGCATAGCAGAGAGTAGCATGAAGAGTCTTAATGGTTATAAGgtctaaattttgttataactaaaggattctatcacagctatataatatttagtttagttctttcaatttcattccttgattttttcttttgcttgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA