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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTCTTTTTGTCTCGAAAGAAGAGGATGCTGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAGgtaatatgactaaatcaacctactatagtcagtctcaagttgtatccaagtttttgtattcaatgcattagcatggtcctttgaatttactcatgtaatc...

Basic information

species Glycine max
transcript GLYMA04G40920.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40920.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0098g01140.t01 (Vitis vinifera), 5'ss of exon 5
AATTTTCTTTTTGTCTCGAAAGAAGAGGATGCTGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAGgtaatatgactaaatcaacctactat-agtcagtctcaagttgtatccaagtttttgtattcaatgcattagcatggtcctttgaatttactcatgtaatc--
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AATTTTCTTTTTACCACAAGGGATGAGGATGCTCCGATGAAGGTTATTGATTTTGGTCTTTCTGATTTTATTAGAACAGgtaat--ggttgtgtccacaagtaatcattctttcttcaataagcattatattgtagggctaaatttcata-catggaacactttggtggttcaattagaagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|197664621|gb|FD480324.1|FD480324
EST:     TGCTGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAG                         ATCAACGCCTCAATGACATTGTTGGCAGTGCCTACTACGTTGCACCTGAAG
genomic: TGCTGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAGgtaatatgac ... aaacatgcagATCAACGCCTCAATGACATTGTTGGCAGTGCCTACTACGTTGCACCTGAAG