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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAGgtagaaatggttatggtttatttatgatgcgtgttttcttcttaataattgttgactgtgttattgattgaatcaactccactttcctgactatag

Basic information

species Glycine max
transcript GLYMA04G40760.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207783973|gb|GD755497.1|GD755497
EST:     CTCTTTCTTAACTGTGGCCAG                         GTCGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCC
genomic: CTCTTTCTTAACTGTGGCCAGgtagaaatgg ... ctgactatagGTCGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCC
EST: gi|24206050|gb|BU965303.1|BU965303
EST:     GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAG                         GTCGTTGATTGCCGT-TTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCC
genomic: GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAGgtagaaatgg ... ctgactatagGTCGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCC
EST: gi|209715024|gb|BW650875.1|BW650875
EST:     GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAG                         GTCGTTGATTGCCGTGTTTGTGGGGATCCT
genomic: GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAGgtagaaatgg ... ctgactatagGTCGTTGATTGCCGTGTTTGTGGGGATCCT
EST: gi|209727718|gb|BW658455.1|BW658455
EST:     GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAG                         GTCGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCC
genomic: GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAGgtagaaatgg ... ctgactatagGTCGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCC
EST: gi|51335860|gb|CO979726.1|CO979726
EST:     GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAG                         GTCGTTGATTGCCGT-TTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCC
genomic: GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAGgtagaaatgg ... ctgactatagGTCGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCC
EST: gi|254327104|gb|GR836713.1|GR836713
EST:     GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAG                         GTCGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCC
genomic: GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAGgtagaaatgg ... ctgactatagGTCGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTGAGGTTTGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTACTGAAGAGCAGTTGGCGGGGCTCTTTCTTAACTGTGGCCAGgtagaaatggttatggtttatttatgatgcgtgttttcttcttaataattgttgactgtgttattgattgaatcaactccactttcctgactatag

- - CTGAAG
- -  TGAAGA
- - - - AGAGCA
- - - -  GAGCAG