1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGgtagaaatggttacgatttgtttatgacatgtgctttcttcataattatggttgatcgtgttactaaattgacacgttgttcttggctatag
species | Glycine max |
transcript | GLYMA04G40750.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|9203628|gb|BE329852.1|BE329852
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGgtagaaatgg ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: TGGCAGCTCTCTTTCTCAACTGTGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCNATTTGCCEST: gi|105634386|gb|DW247535.1|DW247535
genomic: TGGCAGCTCTCTTTCTCAACTGTGGCCAGgtagaaatgg ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCGGCTCTCTTTCTCAACTGTGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|193540284|gb|FK494802.1|FK494802
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGgtagaaatgg ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: CAGCTCTCTTTCTCAACTGTGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|208205444|gb|GE004889.1|GE004889
genomic: CAGCTCTCTTTCTCAACTGTGGCCAGgtagaaatgg ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|151412507|gb|EV282319.1|EV282319
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGgtagaaatgg ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGgtagaaatgg ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGgtagaaatggttacgatttgtttatgacatgtgctttcttcataattatggttgatcgtgttactaaattgacacgttgttcttggctatag
- - CTGAAG
- - TGAAGA
- - - - AGAGCA
- - - - GAGCAG
- - - - - GCAGCT
- - - - - - CAGCTG
- - - - - - - - - GCAGCT
- - - - - - - - - CAGCTC