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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAATTCGTTTGTCAATGGCTACACATGGCTCAAATAAGACGGTGAAAAGTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGgtaagatttttgtttgtttagcctgtgtgtccaagaagattgtccttgcttgtgaaaggagatttatttttcttttgtag

Basic information

species Glycine max
transcript GLYMA04G40450.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193532277|gb|FK490193.1|FK490193
EST:     GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTG                         GGGGAGAAAGGTTCAGAAAAT
genomic: GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGgtaagatttt ... tcttttgtagGGGGAGAAAGGTTCAGAAAAT
EST: gi|120492012|gb|EH220179.1|EH220179
EST:     GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTG                         GGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
genomic: GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGgtaagatttt ... tcttttgtagGGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
EST: gi|192310104|gb|FK001886.1|FK001886
EST:     GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTG                         GGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
genomic: GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGgtaagatttt ... tcttttgtagGGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
EST: gi|58018711|gb|CX705453.1|CX705453
EST:     GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTG                         GGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
genomic: GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGgtaagatttt ... tcttttgtagGGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
EST: gi|58024702|gb|CX711443.1|CX711443
EST:     GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTG                         GGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
genomic: GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGgtaagatttt ... tcttttgtagGGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
EST: gi|58014181|gb|CX700923.1|CX700923
EST:     GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTG                         GGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
genomic: GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGgtaagatttt ... tcttttgtagGGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
EST: gi|17021324|gb|BM092358.1|BM092358
EST:     GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTG                         GGGGAGAAAGGTTCAGAAAATCATGCTTTTTATGAAAGTGCTACTCTTACT
genomic: GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGgtaagatttt ... tcttttgtagGGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
EST: gi|58017559|gb|CX704301.1|CX704301
EST:     GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTG                         GGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT
genomic: GTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGgtaagatttt ... tcttttgtagGGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAATTCGTTTGTCAATGGCTACACATGGCTCAAATAAGACGGTGAAAAGTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGgtaagatttttgtttgtttagcctgtgtgtccaagaagattgtccttgcttgtgaaaggagatttatttttcttttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT