1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATACATTGGTGCGGCAAGCAGCAATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgtttttagtagcttcctcactttttccaacaagcatagtagcatatatttttcaagtatagtttcctcctacaatcatctgatattatttaacttatttcag
species | Glycine max |
transcript | GLYMA04G40220.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG GGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTGEST: gi|22525728|gb|BU084539.1|BU084539
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgtttttagta ... cttatttcagGGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTG
EST: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG GGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTGEST: gi|22525809|gb|BU084620.1|BU084620
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgtttttagta ... cttatttcagGGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTG
EST: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG GGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTGEST: gi|208248028|gb|GE049812.1|GE049812
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgtttttagta ... cttatttcagGGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTG
EST: AACTTCCGTCGGCAG GGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTGEST: gi|207782004|gb|GD754793.1|GD754793
genomic: AACTTCCGTCGGCAGgtttttagta ... cttatttcagGGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTG
EST: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG GGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTGEST: gi|31307902|gb|CD393105.1|CD393105
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgtttttagta ... cttatttcagGGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTG
EST: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG GGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTGEST: gi|16343713|gb|BI969308.1|BI969308
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgtttttagta ... cttatttcagGGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTG
EST: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG GGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTG
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgtttttagta ... cttatttcagGGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACATTGGTGCGGCAAGCAGCAATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgtttttagtagcttcctcactttttccaacaagcatagtagcatatatttttcaagtatagtttcctcctacaatcatctgatattatttaacttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG