1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAATTGTTGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGAGCAAGgtttgttaggtttttcctcttttgaataaaagtttttttttggtagacaaaaattgtaattaaggtgtgtttttggccacaaaaattgaaaatgagatgt...
species | Glycine max |
transcript | GLYMA04G38010.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGAGCAAG GTTCCCGGTGCTGCACAGGCTTCAATCAGAAATTTACCACCTTCTGCCCTTEST: gi|209720121|gb|BW651150.1|BW651150
genomic: TGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGAGCAAGgtttgttagg ... gtgatttcagGTTCCCGGTGCTGCAGAGGCTTCAATCAGAAATTTACCACCTTCTGCCCTT
EST: TGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGAGCAAG GTTCCCGGTGCTGCAGAGGCTTCAATCAGAAATTTACCACCTTCTGCCCTTEST: gi|254332518|gb|GR846456.1|GR846456
genomic: TGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGAGCAAGgtttgttagg ... gtgatttcagGTTCCCGGTGCTGCAGAGGCTTCAATCAGAAATTTACCACCTTCTGCCCTT
EST: TGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGAGCAAG GTTCCCGGTGCTGCAGAGGCTTCAATCAGAAATTTACCACCTTCTGCCCTT
genomic: TGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGAGCAAGgtttgttagg ... gtgatttcagGTTCCCGGTGCTGCAGAGGCTTCAATCAGAAATTTACCACCTTCTGCCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAATTGTTGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGAGCAAGgtttgttaggtttttcctcttttgaataaaagtttttttttggtagacaaaaattgtaattaaggtgtgtttttggccacaaaaattgaaaatgagatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatga