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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGAGTTTACGTCTCCAAACCAAGAGCGGTTTCATCACTACAAGgtttagctcacattctcttgcttttgttatgtgacgagaatgtggtttggtgtattggattttgactatttggtgatgtttatggatttttatttgtttag

Basic information

species Glycine max
transcript GLYMA04G36770.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G100815_T01 (Zea mays), 5'ss of exon 2
GTGGTGAGTTTACGTCTCCAAACCAAGAGCGGTTTCATCACTACAAGgtttagc-----tcacattctcttgcttttgttat----gtgacgagaatgtggtttggtgtattggattttgactatttggtgatgtttatggatttttatttgtttag
|||| |||||||| || ||||||||||| || |||||||| ||||||||          |||   |   ||  |||||||||     |    |||||||  | | | | ||  | |||  ||  || | |       |   || | |||        
GTGGGGAGTTTACTTCACCAAACCAAGAACGTTTTCATCATTACAAGgtaggaaactaatcatgatagtttaattttgttattgtcattttaagaatgttttcttg-gcatcaggtttacacc-ttcgttaggagcaaaatatgtatat--------

upper sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGGTGAGTTTACGTCTCCAAACCAAGAGCGGTTTCATCACTACAAGgtttagctcacattctcttgcttttgttatgtgacgagaatgtggtttggtgtattggattttgactatttggtgatgtttatggatttttatttgtttag
||||||| ||||| ||||| || |||||||| || ||||||||||||||       | |||    ||  || |  | ||   |   ||  | |||  | | |   |||||   | |||  |  ||    |||  ||| |||| |    
GTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAGgtgagtagtatatttctgtgtgttagcca-gtccagtccattagtttttttatttctcatttt--tttttttatcttggggttgg--tttaatttatag--

upper sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 5
GTGGTGAGTTTACGTCTCCAAACCAAGAGCGGTTTCATCACTACAAGgtttagctcacattctcttgctt-ttgttatgt-gacgagaatgtggtttggtgt--attgga-ttttgactatttggtgatgtttatggatttttatttgtttag-------------------------
|||||||||||||||| || || |||||| | || ||||||||||||||    | |      | || ||| || || ||  ||  | ||||| ||||  |||  |||||| | |||  | | |    ||  ||   | |     || |   |                          
GTGGTGAGTTTACGTCCCCGAATCAAGAGTGCTTCCATCACTACAAGgtacgacacttgccatgtttcttcttattttgaagaaaacaatgtagtttattgttcattggagtcttggttgtgtttctataatttgtggtcaaggttagaacaatgcatttgctattttgctgttgcag