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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGAAGAGATCGATGTGAGTCATCCAGACTTTTTCAGTGTGGCAAAACTCAATGGTTATATTCCTCCAAATAAAGAGgtctaagcacttttctcttgaagttccctttaaaatagattcattccttttaatttcagtagatttatctccttaaagattaagctattaggtggagacc...

Basic information

species Glycine max
transcript GLYMA04G36610.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36610.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g09970.t01 (Vitis vinifera), 5'ss of exon 5
CCATGAAGAGATCGATGTGAGTCATCCAGACTTTTTCAGTGTGGCAAAACTCAATGGTTATATTCCTCCAAATAAAGAGgtctaagcactt------ttctcttgaagttccctttaaaatagattcattcctt-ttaatttcagtagatttatctccttaaagattaagctattaggtggagacc
 || |||||||| |||||||| |||||||| || |||||||  ||||| | |||||| ||| ||||||||||||||||||| |   || |       |    ||||   |   | | | |||  |   ||| |  |    | ||||  |||  |  ||||    ||| | || ||   ||      
TCACGAAGAGATTGATGTGAGCCATCCAGAATTCTTCAGTGCAGCAAAGCACAATGGATATGTTCCTCCAAATAAAGAGgtatttacaatgaagaagtctgtttgagtgtgattatgacataagtcacttcttcatctgctccagtgaattagtaacctt---cattgacctgttcactgat----