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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTGTTGGAATGTGTAGCATgtgtgtagtattttacttgaacaagtttctttttgatttatttcatctatttccattcctgttttgtgcattattatatccaatactgtttttaacagat...

Basic information

species Glycine max
transcript GLYMA04G36360.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36360.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTGTTGGAATGTGTAGCATgtgtgta-gtattttacttgaacaagtttctttttgatttatttcatctatttccattcctgttttgtgcattattatatccaatactgtttttaacagat------------------------------------------------------------------------------------------
|||||||||||||| |||||||| |||||||||||||| || ||||| || ||||  || || || ||| ||| |   ||||||||||||||| ||||||||||||    | ||   |     |   || ||       || ||     || |  |||  | ||   |  |||      |   || | |||  || | |||                                                                                          
GGACCAAGCTTATATGATTTTCTGCGGAAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGGTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttccttctgttactcttattaccacactaattagcagatctagattattcttccataaattgcatgctgtcat-cagttgatagctgatgctttctttgcttcatccttttaggaatacctaatacctaacctgctttgtttgtttatatatttatcttctctgtaatgtgtgttgcag

upper sequence: GLYMA04G36360.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G179308_T01 (Zea mays), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTGTTGGAATGTGTAGCATgtgtgtagtattttacttgaacaagtttctttttgatttatttcatctatttccattcctgttt--------tgtgcattattatatccaat-actgtttttaacagat-----------------------------------------------------------------------
|||||||||||||| |||||||| ||| |||||||||| || ||||| || ||||  || || || ||||||| |   ||||||||||||||| ||||||||||||      ||  |   |  |       |    | || | ||| ||  |   ||  | |||        ||||||  ||| || || || | |  |    |    |                                                                       
GGACCAAGCTTATATGATTTTCTGCGGGAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGATTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttcttcctattatcgctcctgcactataatgcatatacattagtttttttttgcaatatatgtgcagcattgtagcctatcattaatccatattactactcatgcttaaggaatatctaacatcatgggatgtttatgtatttaccctctctctgtaatgtgttgcag

upper sequence: GLYMA04G36360.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G24740.1 (Arabidopsis thaliana), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTGTTGGAATGTGTAGCATgtgtgtagtattt---------tacttgaacaagtttct---ttttgattta--tttcatctatttccattcctgttttgtgcattattatatccaatactgtttttaacagat------------------------------------
||| | || ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||         |  ||  ||| | |  |   |||| || |   |||    | |  |       |||   | ||||| | | |  | | | | | ||  ||  |                                    
GGATCGAGTTTATACGATTTTCTTCGGAAAAACAATTATCGCTCCTTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTCTTGGAATGTGTAGCATgtgtgtagtctttgcagtcttttcattctacatgctcgtgcatttttatctgagttttgcttgtcactgagatggttacat-cattagtttttgaatttcagctcttttcatttcttatggcaattttcttgtctatttttgttttgcag

upper sequence: GLYMA04G36360.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTGTTGGAATGTGTAGCATgtgtgtagtattttacttgaacaagtttctttttgatttatttcatctatttccattcc-tgttttgtgcattattatatccaata-ctgtttttaacagat
||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||  |   ||    |  ||| ||||  ||  ||      | |  |  ||   | ||   |   ||||  | |  |||  ||  | ||   |   
GGACCAAGCTTATACGATTTTCTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATgtgtgtagtaaatacttttgctagtttttttttcaatccataatgcgtttgccttttgtgtattccatctcttatactgttgaatgtctactatttgtaa--