Sequence
atgc intronic sequence ATGC exonic sequenceATTACTGGCCACAGTACACTCCAATATCAGCACCTGCAGATCACGATCTTACGCTTTTCACTGTCTCAAAAAGCACTGGCCATGCAGGAATGCGCATAGGgtaagttgacccataacttgaagactaccttatctactgtcctcttcaattttttttttaattaagtttatatacagttcataagtactttttgtactgc...
Basic information
species | Glycine max |
transcript | GLYMA04G36040.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G36040.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G24670.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTACTGGCCACAGTACACTCCAATATCAGCACCTGCAGATCACGATCTTACGCTTTTCACTGTCTCAAAAAGCACTGGCCATGCAGGAATGCGCATAGGgtaagt-tgacccataactt----gaagactaccttatctactgtcctcttcaatttttt-ttttaattaagtttatatacagttcataagtactttttgtactgc
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ACTATTGGCCACAGTATACACCGATAACATCACCAGCTGATCACGATGTTATGCTCTTCACTGCTTCAAAGAGCACTGGCCATGCAGGGATACGGATTGGgtaagtacaatcttttgcttttgtgggagcaaaacagagaacaagtctcttaaacgttacattcttgttcatttaatttgcag-----------------------
upper sequence: GLYMA04G36040.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g08990.t01 (Vitis vinifera), 5'ss of exon 5
ATTACTGGCCACAGTACACTCCAATATCAGCACCTGCAGATCACGATCTTACGCTTTTCACTGTCTCAAAAAGCACTGGCCATGCAGGAATGCGCATAGGgtaagttgacccataacttgaagactaccttatctactgtcctcttcaattttttttttaattaagtttatatacagttcataagt--actttttgtactgc----------------------------
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ACTACTGGCCACAGTACACTCCAATTTCTTCTCCTGCAGACCATGATCTCATGTTGTTCACTGTCTCAAAAGCCACTGGCCATGCTGGGATGCGCCTTGGgtaagcagttc--ttact--aacattaccaaaacaaacatggaaatct-ttcttcttgtatttagatgtat-tacaacatgtagatcgactctctaaacattcccatccatgatcaattatgccttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13251877|gb|BG362780.1|BG362780EST: ACGCTTTTCACTGTCTCAAAAAGCACTGGCCATGCAGGAATGCGCATAGG GTGGGCTCTTGTGAAAGACCAAGAGGTAGCAAAGAAAATGACTAAATTCAT
genomic: ACGCTTTTCACTGTCTCAAAAAGCACTGGCCATGCAGGAATGCGCATAGGgtaagttgac ... ttttgtatagGTGGGCTCTTGTGAAAGACCAAGAGGTAGCAAAGAAAATGACTAAATTCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTACTGGCCACAGTACACTCCAATATCAGCACCTGCAGATCACGATCTTACGCTTTTCACTGTCTCAAAAAGCACTGGCCATGCAGGAATGCGCATAGGgtaagttgacccataacttgaagactaccttatctactgtcctcttcaattttttttttaattaagtttatatacagttcataagtactttttgtactgc
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