Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAGgtagtatgatctatgaacacttccaaatgttttggatatatttcattgttgatatcaatctttgcgtttcaaaagtcatttgtgaatctcttaagttataacaaaaaataacaatgatttttttcttctcag

Basic information

species Glycine max
transcript GLYMA04G35730.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G35730.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g08560.t01 (Vitis vinifera), 5'ss of exon 5
GGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAGgtagtatgatctatgaacacttccaaa---tgttttggatatatttcattgttgatatcaatctttgcgtttcaaaagtcatttgtgaatctcttaagttataacaaaaaataacaatgatttttttcttctcag
| | || |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||  |||| |||| ||||||||| | |     ||  | |  |  | |   |||||| | ||  ||   | ||| | |         |    |  | ||| |||   |||   ||   ||  |                                 
GTCCGGGTTTTGGAGTGCAATGGCATCAAATTTGACAAACCAATCTCGTAATGTTCTTAGCAAGAAGTTCATGATTAAGAAAGAGgtaatctacaggatccagatcttaataacctgtttttggta-gttatttagtttacaaaggagaaaggaagttgatagttatt---gaactgctagtgtcgtgg-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31469095|gb|CD411123.1|CD411123
EST:     CAAATCAATCTCGTAATGTTCTTAGCCAAAAGGCCATGGTTAATAAAGAG                         GATTCTATGGACAACATTACTCTCTTCTCTATCATAACAGTAATGTCCTTC
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAGgtagtatgat ... ttcttctcagGATTCTATGGACAACATTACTCTCTTCTCTATCATAACAGTAATGTCCTTC
EST: gi|10256147|gb|BE823913.1|BE823913
EST:     CAAATCAATCTCGTAATGTTCNTAGCAAAAAGNNCATGGTTAATAAAGAG                         GATTCTATGGACAACATTACTCTCTTCTCTATCATACCAGTAATNTNCTTC
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAGgtagtatgat ... ttcttctcagGATTCTATGGACAACATTACTCTCTTCTCTATCATAACAGTAATGTCCTTC
EST: gi|207704437|gb|GD686652.1|GD686652
EST:     CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAG                         GATTCTATGGACAACATTACTCTCTTCTCTATCATAACAGTAATGTCCTTC
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAGgtagtatgat ... ttcttctcagGATTCTATGGACAACATTACTCTCTTCTCTATCATAACAGTAATGTCCTTC
EST: gi|192301535|gb|FG998443.1|FG998443
EST:     CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAG                         GATTCTATGGACAACATTACTCTCTTCTCTATCATAACAGTAATGTCCTTC
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAGgtagtatgat ... ttcttctcagGATTCTATGGACAACATTACTCTCTTCTCTATCATAACAGTAATGTCCTTC
EST: gi|58016526|gb|CX703268.1|CX703268
EST:     CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAG                         GATTCTATGGACAACATTACTCTCTTCTCTATCATAACAGTAATGTCCTTC
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAGgtagtatgat ... ttcttctcagGATTCTATGGACAACATTACTCTCTTCTCTATCATAACAGTAATGTCCTTC