Sequence
atgc intronic sequence ATGC exonic sequenceAAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatctattgtggtttatgctggattgctgactcaaatctttgtgtgattaaagtattaagttgaaaagttagtgatttaggtttctttgaatggatgatacag
Basic information
species | Glycine max |
transcript | GLYMA04G34440.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G34440.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G74740.1 (Arabidopsis thaliana), 5'ss of exon 4
AAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatctattgtggtttatgctggattgctgactcaaatctttgtgtgattaaagtattaagttgaaaagttagtgatttaggtttctttgaatggatgatacag
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GAATGCAAAGAAAGCTCCAAATGTTCCTTTAGGGGATATTGTTAGGTCAAGGTTGAAGCAATTCTCCATGATGAATAGATTGAAAAAGAAAGCTCTGCGTgtaagtgttgcctctcatttttttcagatgagt---ttatacttttgt----ttggagctttgattggt----ttaacttacttgctcccttttgatgcttccag---
upper sequence: GLYMA04G34440.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G18890.1 (Arabidopsis thaliana), 5'ss of exon 4
AAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatctattgt--ggtttatgctggattgctgactcaaatcttt-gtgtgattaaagtattaagttgaaaagttagtgatttaggtttctttgaatggatgatacag
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GAATGCAAAGAAAGCTCCCAATGTTCCTTTAGGAGATATAGTCAGATCTAGGTTGAAGCAGTTCTCTATGATGAACAGATTCAAAAAGAAAGTTCTTCGTgtaagtgttttttttttgccttttacttttctgctgaagtttgtagagagtctgttgtgtgtgtctatatttggttttgatcattatcatccctgttaatgcttccag---
upper sequence: GLYMA04G34440.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g05520.t01 (Vitis vinifera), 5'ss of exon 4
AAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatctattgtggtttatgctggattgctgactcaaatctttg----tgtgattaaagtattaagttgaaaagtt-----agtgatttaggtttctttgaatggatgatacag
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GAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGAACAAGGCTCAAGCAGTTCTCTTGCATGAACAGATTCAAGAAGAAAGCCATGCGAgtaagtgtccacatttgttgaagtgtaactgct-actcaggctgtgaccgttattgccataatttgcagttcatatcttttatagatgatttctgtttgttccatcaaatgctgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207775165|gb|GD749494.1|GD749494EST: TAAGCAGTTTTCTGTGATGAATAGACTCAAAAAGAAAGCTCTGCGG GTAATTGCAGAACATTTATCTGTTGAAGAGGTAGAAATAATCAAAGACATG
genomic: TAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatct ... gatgatacagGTAATTGCAGAACATTTATCTGTTGAAGAGGTAGAAATAATCAAAGACATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGgttagcatctattgtggtttatgctggattgctgactcaaatctttgtgtgattaaagtattaagttgaaaagttagtgatttaggtttctttgaatggatgatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA