1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAAAGTCTTGACTGCAATAGCTGGTGAGACAGCTGCACAACTTCCTGAAGCTGTGAGAAAAGAGAGGGTGAAGCTACCTGGTCAAAGTGTTGGAGCAGAGgtacatgcccttactccattttccttataaataaacaaggttctgtcttgcctcctcacacttaacaccaattatggaatacaatattatatgcag
species | Glycine max |
transcript | GLYMA04G21900.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGTGAGAAAAGAGAGGGTGAAGCTACCTGGTCAAAGTGTTGGAGCAGAG GAAGAGGTTATAGCTGAGG-TGTTGACGATGAAGAAGAAEST: gi|208106020|gb|GD904233.1|GD904233
genomic: CTGTGAGAAAAGAGAGGGTGAAGCTACCTGGTCAAAGTGTTGGAGCAGAGgtacatgccc ... ttatatgcagGAAGAGGTTATAGCTGAGGGTGTTGACGATGAAGAAGAA
EST: CTGTGAGAAAAGAGAGGGTGAAGCTACCTGGTCAAAGTGTTGGAGCAGAG GAAGAGGTTATAGCTGAGGGTGTTGACGATGAAGAAGAAATGGAGGAAATA
genomic: CTGTGAGAAAAGAGAGGGTGAAGCTACCTGGTCAAAGTGTTGGAGCAGAGgtacatgccc ... ttatatgcagGAAGAGGTTATAGCTGAGGGTGTTGACGATGAAGAAGAAATGGAGGAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGTCTTGACTGCAATAGCTGGTGAGACAGCTGCACAACTTCCTGAAGCTGTGAGAAAAGAGAGGGTGAAGCTACCTGGTCAAAGTGTTGGAGCAGAGgtacatgcccttactccattttccttataaataaacaaggttctgtcttgcctcctcacacttaacaccaattatggaatacaatattatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG