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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGTCGTGTCAAAACTTTGCACCCTAACATACATGGGGGTATCCTTGCCCGAAGGGACCAAAAACATCACATTGACGCCCTCAGTGCTCATGGGATTGgtaagttatgttattagctgttatttcaagtacgtagtgctcgaaattcgttttgttgaattagagttgtgttcattcagtttgggagaatgtattttttttgcttttgcttaaagctttccttttcag

Basic information

species Glycine max
transcript GLYMA04G16670.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G16670.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g01460.t01 (Vitis vinifera), 5'ss of exon 5
GATGGTCGTGTCAAAACTTTGCACCCTAACATACATGGGGGTATCCTTGCCCGAAGGGACCAAAAACATCACATTGACGCCCTCAGTGCTCATGGGATTGgtaagttatgttattagctgttatttcaagtacgtagtgctcgaaattcgttttgttgaattagagt-tgtgt-tcattcagtttgggagaatgtattttttttgcttttgcttaaagctttcctt-ttcag------------------------------------------
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GATGGCCGTGTGAAAACTTTACATCCAAACATACATGGGGGTATTCTTGCTAGAAGAGACCAAAAGCTTCACATGGAAGCTCTTAATGAGCATGGAATTGgtgagttctgttatcaactccttaattaattgtcct-tgctagattgtagggtatttgaacaaatgcatatttgtcaagcagctggattctctaaaaatttttgttacatcattatatttttgtttgtttaagcatggtagatatttgctattactaaaacggtttcccaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323163|gb|FK017389.1|FK017389
EST:     CCGAAGGGACCAAAAACATCACATTGACGCCCTCAGTGCTCATGGGATTG                         GTACTTTTGATGTTGTGGTAGTGAACCTGTACCCATTTTACGATAAAGTCA
genomic: CCGAAGGGACCAAAAACATCACATTGACGCCCTCAGTGCTCATGGGATTGgtaagttatg ... tccttttcagGTACTTTTGATGTTGTGGTAGTGAACCTGTACCCATTTTACGATAAAGTCA
EST: gi|151410033|gb|EV279841.1|EV279841
EST:     CCGAAGGGACCAAAAACATCACATTGACGCCCTCAGTGCTCATGGGATTG                         GTACTTTTGATGTTGTGGTAGTGAACCTGTACCCATTTTACGATAAAGTCA
genomic: CCGAAGGGACCAAAAACATCACATTGACGCCCTCAGTGCTCATGGGATTGgtaagttatg ... tccttttcagGTACTTTTGATGTTGTGGTAGTGAACCTGTACCCATTTTACGATAAAGTCA
EST: gi|20812245|gb|BQ296723.1|BQ296723
EST:     CCGAAGGGACCAAAAACATCACATTGACGCCCTCAGTGCTCATGGGATTG                         GTACTTTTGATGTTGTGGTAGTGAACCTGTACCCATTTTACGATAAAGTCA
genomic: CCGAAGGGACCAAAAACATCACATTGACGCCCTCAGTGCTCATGGGATTGgtaagttatg ... tccttttcagGTACTTTTGATGTTGTGGTAGTGAACCTGTACCCATTTTACGATAAAGTCA
EST: gi|193366619|gb|FK331949.1|FK331949
EST:     CCGAAGGGACCAAAAACATCACATTGACGCCCTCAGTGCTCATGGGATTG                         GTACTTTTGATGTTGTGGTAGTGAACCTGTACCCATTTTACG
genomic: CCGAAGGGACCAAAAACATCACATTGACGCCCTCAGTGCTCATGGGATTGgtaagttatg ... tccttttcagGTACTTTTGATGTTGTGGTAGTGAACCTGTACCCATTTTACG