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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAATAATATAGTTTACCCAAAAGGTTGGGTGCTTCAGAAAAACCTAGATGCTGTCATACCTGTCAAGTAATCCTCCACCAATTTTATTGTGTGTGATAGgtatgatctgattagtaatgtggcatatagagttttatctgtaattcttaaagcaaatgcagaatgcggttcacttataaattcaaattttaaagtgata...

Basic information

species Glycine max
transcript GLYMA04G09470.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125293|gb|BG315863.1|BG315863
EST:     GCTGTCATACCTGTCAAGTAATCCTCCACCAATTTTATTGTGTGTGATAG                         TTTGCCCATATTTGGTATTGGTTCATCACTGAATAGATGGATGCATGAGTT
genomic: GCTGTCATACCTGTCAAGTAATCCTCCACCAATTTTATTGTGTGTGATAGgtatgatctg ... ttcatgacagTTTGCCCATATTTGGTATTGGTTCATCACTGAATAGATGGATGCATGAGTT
EST: gi|13125367|gb|BG315937.1|BG315937
EST:     GCTGTCATACCTGTCAAGTAATCCTCCACCAATTTTATTGTGTGTGATAG                         TTTGCCCATATTTGGTATTGGTTCATCACTGAATAGATGGATGCATGAGTT
genomic: GCTGTCATACCTGTCAAGTAATCCTCCACCAATTTTATTGTGTGTGATAGgtatgatctg ... ttcatgacagTTTGCCCATATTTGGTATTGGTTCATCACTGAATAGATGGATGCATGAGTT
EST: gi|20813076|gb|BQ297554.1|BQ297554
EST:     GCTGTCATACCTGTCAAGTAATCCTCCACCAATTTTATTGTGTGTGATAG                         TTTGCCCATATTTGGTATTGGTTCATCACTGAATAGATGGATGCATGAGTT
genomic: GCTGTCATACCTGTCAAGTAATCCTCCACCAATTTTATTGTGTGTGATAGgtatgatctg ... ttcatgacagTTTGCCCATATTTGGTATTGGTTCATCACTGAATAGATGGATGCATGAGTT
EST: gi|17153212|gb|BM143145.1|BM143145
EST:     GCTGTCATACCTGTCAAGTAATCCTCCACCAATTTTATTGTGTGTGATAG                         TTTGCCCATATTTGGTATTGGTTCATCACTGAATAGATGGATGCATGAGTT
genomic: GCTGTCATACCTGTCAAGTAATCCTCCACCAATTTTATTGTGTGTGATAGgtatgatctg ... ttcatgacagTTTGCCCATATTTGGTATTGGTTCATCACTGAATAGATGGATGCATGAGTT