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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgctttgtccttgatatttttctccttcttatcctcctttttaactgatgttaatttgatgatcccaccttaacatttttttactgcacttgtctgctcag

Basic information

species Glycine max
transcript GLYMA04G08560.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08560.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g55540.1 (Oryza sativa), 5'ss of exon 5
CCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgctttgtccttgatatttttctccttcttatcctcctttttaac-tgatgttaatt-tgatgatcccaccttaacatttttttactgcacttgtctgctcag
 ||||| |||||||| || |||||  | || ||||| |||||||| ||||||||||| ||||| || || ||||||||| | || |  || |||||  |||||| |   | || | | | |  ||      | || ||     | |  |     |||  || | ||||      |   |||   | || | | |               
TCCTGCCATTCAAGAGAATAGGGTGGCTACAGTTCAGTGCTTGTCAGGAACTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaa-tctgccttggctccttcatagatactgatatggttctacattacaatgcaaagtatgatcgctaaattataaacgtgttctccag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412423|gb|EV282235.1|EV282235
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
EST: gi|192306580|gb|FG996242.1|FG996242
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
EST: gi|254321007|gb|GR827456.1|GR827456
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
EST: gi|17022645|gb|BM093679.1|BM093679
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
EST: gi|192334119|gb|FK026276.1|FK026276
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
EST: gi|192326177|gb|FK016279.1|FK016279
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC