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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTCGTCAAAGGTCCATGGTCTAAAGAGgtaaactctactttccatttcttgcccatgttgatcttatctctacatgttagaatttattttgatgtaatattagaatgtataaattttctgtttacatatctaatgtgaagtcacctatcgaatctgaatgcaaacag

Basic information

species Glycine max
transcript GLYMA04G08550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08550.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g12860.1 (Oryza sativa), 5'ss of exon 4
CGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTCGTCAAAGGTCCATGGTCTAAAGAGgtaaactctactttccatttcttgcccatgttgatcttatctctacatgttagaatttattttgatgtaatattagaatgtataaattttctgtttacatatctaatgtgaagtcacctatcgaatctgaatgcaaacag
|||| || ||   ||||||||| ||||||||||||||||| |||||||| || ||  |||| || ||| | |||||||| |||||||| ||||| |||| |      ||  |||| ||   ||| |      ||   ||  || |    | | || ||    | | | | | |||      ||||| |                                               
CGGAATGCTTTCCGGATAGAACCGATGTACAATGCTTGCACAGGTGGCAAAAGGTTCTAAACCCTGAATTAGTCAAAGGGCCATGGTCCAAAGAAgtaagcatgctatttgatttatt-ttcatctcttaaataatactgtat-tggttactcatcttacgctcacaatggcatgctccttttttcag-----------------------------------------------

upper sequence: GLYMA04G08550.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g13570.1 (Oryza sativa), 5'ss of exon 4
CGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTCGTCAAAGGTCCATGGTCTAAAGAGgtaaactctactttccatttcttgcccatgttgatcttatctctacatgttagaatttattttgatgtaatattagaatgtataaattttctgtttacatatctaatgtgaagtcacctatcgaatctgaatgcaaacag
|||| |||||   ||||||||| ||||||||||||||||| |||||||| || ||  |||| || ||| | |||||||| |||||||| ||||| |||   |     |||||||| ||  |  |  | |  |  | |  |   || | |||    |        | | |    |||     ||||| |                                               
CGGAATGTTTTCCGGATAGAACCGATGTACAATGCTTGCACAGGTGGCAAAAGGTTCTAAACCCTGAATTGGTCAAAGGGCCATGGTCCAAAGAAgtaggatgc-tattccatttattttcatttcttagatagtattgattagtcataatacgctc-------acaatgacttgttccctttttcag-----------------------------------------------

upper sequence: GLYMA04G08550.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g03750.t01 (Vitis vinifera), 5'ss of exon 4
CGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTCGTCAAAGGTCCATGGTCTAAAGAGgtaaactctactttccatttcttgcccatgttgatcttatctctacatgttagaatttattttgatgtaatattagaatgta--taaattttctgtttacatatctaatgtgaagtcacctatcgaatctgaa--tgcaaacag
| || |||||||||||| | || ||||| || || ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||   | | |||       |  | | |||    |  ||| | ||   | | | |  ||    | || ||   ||||  ||| ||    || |  ||   ||   ||   | |||  | || ||| |   |  ||||||
CTGAATGTTTCAAGGATCGGACCGATGTTCAGTGTTTGCACAGGTGGCAGAAAGTCTTAAATCCTGAACTCATCAAAGGTCCATGGTCTAAAGAGgtgaattcatttgtacatcagactgctttatagattccttgcctaaa-gtaccattatttcatgggcaattaatatcttgtaactaagttgctggtgtttattgatacaatggtataaccagttgattctaatattataaacag