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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGACGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGTGAGGATCCAACACAGTCGTATGCTCTCATATGTGGTAACTGCTATATGCATAATGgtaagggggctagatttgatcttgtatgctcatgtccttttgcattattgcagaataaagatgattgtactagggctattttgttttttacaatagaccatgttaatagatgaatacaacagtcaaaaaaattgtattcttatctgcttattttctttcag

Basic information

species Glycine max
transcript GLYMA04G07860.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07860.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g41990.1 (Oryza sativa), 5'ss of exon 4
CAAGACGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGTGAGGATCCAACACAGTCGTATGCTCTCATATGTGGTAACTGCTATATGCATAATGgtaagggggctagatttgatcttgtatgctcatgtccttttgcattattgcagaataaagatgattgtactagggctattttgttttttacaatagaccatgttaatagatgaatacaacagtcaaaaaaattgtattcttatctgcttattttctttcag
   || || |||||||| |||  ||| || ||||||||||| || ||||||||  | |||||||| ||| | |||||||| |||||  ||||||||||||||  |   |  | |    |   | | || ||   |     ||   | ||  | || |  ||||  | |||| |   ||| |     |  |                                                                       
AGTGATGGTGGATGGATAGCAAAAATCGCTGCTTTACTTGTTGGGGAGGATCCGTCGCAGTCGTACGCTTTGATATGTGGAAACTGTCATATGCATAATGgtgtgtacgacaaacagaac--tatttgatctcttttgcctgttgtgttaaaaaagactgatgcat-tacttga--tatatcaacgtgcag----------------------------------------------------------------------

upper sequence: GLYMA04G07860.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G074436_T01 (Zea mays), 5'ss of exon 4
CAAGACGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGTGAGGATCCAACACAGTCGTATGCTCTCATATGTGGTAACTGCTATATGCATAATGgtaagggggctagatttgatcttgtatgctcatgtccttttgcattattgcagaataaagatgattgtactagggctattttgttttttacaatagaccatgttaatagatgaatacaacagtcaaaaaaattgtattcttatctgcttattttctttcag
 | |  || ||||||||||||   ||||| || ||||||||||| ||||| ||| |||||||||||||| | |||||||| | |||| |||||||||| |||  |     |||||   | ||  | || |  | | |   | |  ||    |  ||       |||   |||    |||     ||||| ||                                                                     
GATGGTGGTGGATGGATTGCAAAGATTGCTGCCTTACTTGTGGGGGAGGACCCATCACAGTCGTATGCTTTGATATGTGGCAGCTGCCATATGCATAACGgtgtgtattatagatc-aagctcttttgatatttttcacataccatacctaaatatcggatgcattac-ctaa---tataccaatttttgcag--------------------------------------------------------------------

upper sequence: GLYMA04G07860.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G153332_T01 (Zea mays), 5'ss of exon 4
CAAGACGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGTGAGGATCCAACACAGTCGTATGCTCTCATATGTGGTAACTGCTATATGCATAATGgtaagggggctagatttgatcttgtatgctcatgtccttttgcattatt-gcagaataaagatgattgtactagggctattttgttttttacaatagaccatgttaatagatgaatacaacagtcaaaaaaattgtattcttatctgcttattttctttcag
 | |  || ||||||||||||   ||||| || ||||||||||  ||||| ||| ||||||| |||||| | |||||||| |||||| ||||||||||||||  |              | || ||  |  |   | |||   ||| ||  || |  | |  |   |   | ||   || |    | ||| ||                                                                     
GATGGTGGTGGATGGATTGCAAAGATTGCTGCCTTACTTGTGGCAGAGGACCCATCACAGTCATATGCTTTGATATGTGGCAACTGCCATATGCATAATGgtgtg--------------tattatagacaaagcacttttgatatttttcacataccataattacctaacccagtattact--aatatttgcag--------------------------------------------------------------------

upper sequence: GLYMA04G07860.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0432g00020.t01 (Vitis vinifera), 5'ss of exon 2
CAAGACGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGTGAGGATCCAACACAGTCGTATGCTCTCATATGTGGTAACTGCTATATGCATAATGgtaagggggcta--gatttgatcttgtatgctcatgtccttttgcattattgcagaataaagatgattgtactagggctattttgttttttacaatagaccatgttaatagatgaatacaacagtcaaaaaaattgtattcttatctgcttattttctttcag
|| || || ||||||||||| |||||||| ||  |||||||||| |||||||||||| |||| ||||| || |||||||| |||||  ||||||||||||||||| ||  |   ||  | ||| | ||                                                                                                      || | || || |  | |  || ||||  | |||
CATGATGGGGGATGGATTGCTCGAATTGCTGCACTACTTGTGGGGGAGGATCCAACAGAGTCTTATGCACTTATATGTGGAAACTGTCATATGCATAATGgtaagtggagtgaggacctcatcct-tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagtagttttgtcctgtttttgtttttgtgcag

upper sequence: GLYMA04G07860.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0215g00090.t01 (Vitis vinifera), 5'ss of exon 5
CAAGACGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGTGAGGATCCAACACAGTCGTATGCTCTCATATGTGGTAACTGCTATATGCATAATGgtaagggggctagatttgatcttgtatgctcatgtccttttgcattattgcagaataaagatgattgtactagggctattttgttttttacaatagaccatgttaatagatgaatacaacagtcaaaaaaattgtattcttatctgcttattttctttcag
|| || || ||||||||||| |||||||| ||  |||||||||| |||||||||||| |||| ||||| || |||||||| |||||  ||||||||||||||||| ||  |      || ||   || || |     | |     |  | ||| || |   |  ||  |  |   || ||||  |   |       ||  |||||||                                                      
CATGATGGGGGATGGATTGCTCGAATTGCTGCACTACTTGTGGGGGAGGATCCAACAGAGTCTTATGCACTTATATGTGGAAACTGTCATATGCATAATGgtaagtggagtgag---gacctc--atccttacaaaatgtatttctgcttcaggattacttttgtt-catcattacttttttcctccatgtcccctac--tgttaatt-----------------------------------------------------

upper sequence: GLYMA04G07860.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0033g01150.t01 (Vitis vinifera), 5'ss of exon 6
CAAGACGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGTGAGGATCCAACACAGTCGTATGCTCTCATATGTGGTAACTGCTATATGCATAATGgtaagggggctagatttgatcttgtatgctcatgtccttttgcattattgcagaataaagatgattgtactagggctattttgttttttacaatagaccatgttaatagatgaatacaacagtcaaaaaaattgtattcttatctgcttattttctttcag
 | || || ||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||| |||||||| || |||||| ||||||| ||||||||| ||  |||  || |  |  |   | ||  |    || ||   |   ||  |    ||   |     |||| | ||| ||||  | ||                                                                     
TATGATGGGGGATGGATTGCTCGAATTGCAGCATTGCTTGTGGGTGAGGATCCAACACAGTCATATGCGCTCATATGCGGGAACTGCCATATGCACAATGgtaagtggagtagtattcacatccttaacccacctggacttccaac-tcttagttttgtcatatct---tcaggggtctttggtttggtgcag--------------------------------------------------------------------