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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGAgtaagttcttgcattcattggaatgtctcctctcgtgtccatgtacatgacaggtcatgtacaagttttgcatctatttctctctttaataatttttata...

Basic information

species Glycine max
transcript GLYMA04G07120.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07120.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g05460.t01 (Vitis vinifera), 5'ss of exon 5
TTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGAgtaagttcttgcattcattggaatgtctcctctcgtgtccatgtacatgacaggtcatgtacaagttttgcatctatttctctctttaataatttttata
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TTGGAATGCAACATATGAGAGTTTACTGGGGACCAACAAGCCTCTCCCCCAGCCTATCCCTCTCCCTgtaagtttgcttggatgtggtggttttgggccctgttattttttgggcaataaagcatgcgtt--tcctgactgtacatttgatttcaattgacag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298186285|gb|HO036918.1|HO036918
EST:     AGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCGATTCCTCTTGGA                         GAAATGGTTGATTTTCTTG
genomic: AGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGAgtaagttctt ... tacctgacagGAAATGGTTGATTTTCTTG
EST: gi|151409723|gb|EV279531.1|EV279531
EST:     AGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGA                         GAAATGGTTGATTTTCTTGTTGATATTTGGGAGATGGAAGGCCTATATGAC
genomic: AGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGAgtaagttctt ... tacctgacagGAAATGGTTGATTTTCTTGTTGATATTTGGGAGATGGAAGGCCTATATGAC
EST: gi|58020771|gb|CX707513.1|CX707513
EST:     AGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGA                         GAAATGGTTGATTTTCTTGTTGATATTTGGGAGATGGAAGGCCTATATGAC
genomic: AGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGAgtaagttctt ... tacctgacagGAAATGGTTGATTTTCTTGTTGATATTTGGGAGATGGAAGGCCTATATGAC
EST: gi|192332868|gb|FK024965.1|FK024965
EST:     AGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGA                         GAAATGGTTGATTTTCTTGTTGATATTTGGGAGATGGAAGGCCTATATGAC
genomic: AGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGAgtaagttctt ... tacctgacagGAAATGGTTGATTTTCTTGTTGATATTTGGGAGATGGAAGGCCTATATGAC