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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCACGAGATTTATCCTTTGATGCCTATGGCTATGCCACTGTATTCCTGTCAAACATCACCACGGCTATATATCTTGCAACCATAGCCCGTGTTGGTCgtattccttgtctctctcattccgacacagtggaaattctataccttttttcattgtagttggagtgcagtttcttacttatttggcattatgtcttttttcag

Basic information

species Glycine max
transcript GLYMA04G07030.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07030.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 5
---GGAGCACGAGATTTATCCTTTGATGCCTATGGCTATGCCACTGTATTCCTGTCAAACATCACCACGGCTATATATCTTGCAACCATAGCCCGTGTTGGTCgtattccttgtctctctcattccgacacagtggaaattctataccttttttcattgtagttggagtgcagtttcttacttatttggcattatgtcttttttcag
   || || || || || || |||||| | ||||| |||||   ||| |||||||| |||||||| ||||| ||||| |||||||||||||||||| | ||| | ||| |    |  | | |||            ||| |    |     | |||  |||| | || | |  |||||||  |  | |  ||| |  ||||| ||||
GCGGGTGCTCGGGACTTGTCGTTTGATTCTTATGGTTATGCTGTTGTTTTCCTGTCCAACATCACTACGGCAATATACCTTGCAACCATAGCCCGTATAGgtagaatttc----catttttattttattttttaaaaaacttccaatgacatctca--gtagcttgatttc--tttcttagatgct-gatatttt--cttttctcag