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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACTTTATTCACAACCATTTGGCATTTACTGTTAAGTACCATAAAGACATGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTACACCATTCAGgtcattatttttttgttgtcatattaatttattccatttaattttctacaaattataggaatctcatgtattgggtttcccttttaattgtttcatccttttgtgatgtttagtagtgatttttcaaatctggatgttgatctgcag

Basic information

species Glycine max
transcript GLYMA04G06420.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06420.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g06640.t01 (Vitis vinifera), 5'ss of exon 5
AATACTTTATTCACAACCATTTGGCATTTACTGTTAAGTACCATAAAGACATGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTACACCATTCAGgtcattatttttttgttgtcatattaatttattccatttaattttctacaaat---tataggaatctcatgtattgggtttcccttttaattgtttcatccttttgtgatgtttagtagtgatttttcaaatctggatgttgatctgcag
| || ||||| ||||| ||||||  |||||| || ||||  ||||||||  ||| |||||| || || || |||||||| |||||||| | ||||||||||| | |  ||  | || ||   | || |  | |  || |      | |  | |   ||||   ||  ||| |||    ||| |  ||  ||   | ||                                                    
AGTATTTTATCCACAATCATTTGATATTTACCGTCAAGTTTCATAAAGATTTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAGgtgagttcttgctggtcgttg-actattgaagttgatctttccccccagtagtatatatactgatgacat-tataatatttgctattggatgcatccag---------------------------------------------------