1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagtatttttactctgtagtacaaaatctttaatataacaatcaagtgctaactcaaaattcatactgcacag
species | Glycine max |
transcript | GLYMA04G05550.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG GTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTEST: gi|308098158|gb|HO761329.1|HO761329
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTT
EST: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG GTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTEST: gi|151403620|gb|EV273430.1|EV273430
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTT
EST: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG GTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTEST: gi|254318543|gb|GR832711.1|GR832711
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTT
EST: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG GTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTEST: gi|209721045|gb|BW666302.1|BW666302
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTT
EST: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG GTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTEST: gi|192296477|gb|FG991627.1|FG991627
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTT
EST: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG GTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTEST: gi|209721044|gb|BW666301.1|BW666301
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTT
EST: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG GTTGGTCTACTGAATGTTGACEST: gi|120494245|gb|EH222412.1|EH222412
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGAC
EST: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG GTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTEST: gi|151394491|gb|EV264362.1|EV264362
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTT
EST: AGCTGTTGGAGATAATAACTTGGGCCCAACTTGGAATCCATAAAAA-CCG GTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTT
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagtatttttactctgtagtacaaaatctttaatataacaatcaagtgctaactcaaaattcatactgcacag
- - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - GAGATG