1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCAAAGGTCCATTATGATGCGTCTTTCTTGTGGTGCTCTAGCTGGATTGTTTGGACAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGgtatttaagcatcacttttatgtcttcctgagttggataacttttttccattttagggggtgagggactgagggtgggtgtctatccaaattaactctgc...
species | Glycine max |
transcript | GLYMA04G05530.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGGACAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAG GTTGGCAGCCTGCAAAATGCTGCTCATGAGGATGCCAGATACAAAAGTACAEST: gi|192315153|gb|FK009977.1|FK009977
genomic: TTGGACAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGgtatttaagc ... ctttgtgcagGTTGGCAGCCTGCAAAATGCTGCTCATGAGGATGCCAGATACAAAAGTACA
EST: TTGGACAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAG -TTGGCAGCCTGCAAA-TGCTGCTCAEST: gi|192315154|gb|FK009978.1|FK009978
genomic: TTGGACAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGgtatttaagc ... ctttgtgcagGTTGGCAGCCTGCAAAATGCTGCTCA
EST: TTGGACAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAG GTTGGCAGCCTGCAAAATGCTGCTCATGAGGATGCCAGATACAAAAGTACAEST: gi|105637489|gb|DY577143.1|DY577143
genomic: TTGGACAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGgtatttaagc ... ctttgtgcagGTTGGCAGCCTGCAAAATGCTGCTCATGAGGATGCCAGATACAAAAGTACA
EST: TTGGACAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAG GTTGGCAGCCTGCAAAATGCTGCTCGTGAGGATGCCAGATACAA
genomic: TTGGACAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGgtatttaagc ... ctttgtgcagGTTGGCAGCCTGCAAAATGCTGCTCATGAGGATGCCAGATACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAAGGTCCATTATGATGCGTCTTTCTTGTGGTGCTCTAGCTGGATTGTTTGGACAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGgtatttaagcatcacttttatgtcttcctgagttggataacttttttccattttagggggtgagggactgagggtgggtgtctatccaaattaactctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtggg