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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTTATGATATGGAGGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGgtatatttcatttcgtgtagcatttttctccttgattcgaatcttttgtgctcgaaatcacactctttttgtttactctggcag

Basic information

species Glycine max
transcript GLYMA04G05080.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G05080.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g56050.1 (Oryza sativa), 5'ss of exon 4
GGGGTTATGATATGGAGGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGgtatatttcatttcgtgtagcatttttctccttgattcgaatcttttgtgctcgaa-atcacactctttttgtttactctggcag-----------------------------------------------------------------------------------
| || ||||| ||||||||||| ||||| || || |||||||| || || || ||||||||||| ||||| ||||| || |||||  ||||  |||  ||| |         ||   || ||  || |  | | |||    | || |  ||||  |||   ||   | |   ||                                                                                   
GTGGGTATGACATGGAGGAGAAGGCTGCCAGGGCGTATGATCTTGCTGCGCTCAAGTACTGGGGCCCTTCCACGCACATCAACTTCCCGgtg-attaaattaccaactctgattagttcatttgtt-gcttttcttgcaagcaaacagtacacattttagtttagattttagagtgctagctcaagggcactgtgaatgactgtagttatgatgttacggctatcattgacgtttgttttcaccattttctgggcag

upper sequence: GLYMA04G05080.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
GGGGTTATGATATGGAGGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGgtatatt-tcatttcgtgtagcattttt--ctccttgatt----cgaatcttttg--tgctcgaaatcacactctttttgtttactctggcag--------
| || ||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| ||||| ||||| || || || |||||  |||||  |  ||| |||   ||  ||||||   ||  | | |      |||   ||   || |  |    | | | |   ||  ||     | |         
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatcaattcaattaaaatttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag

upper sequence: GLYMA04G05080.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G008234_T01 (Zea mays), 5'ss of exon 2
GGGGTTATGATATGGAGGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGgt---atatttcatttcgtgtagcatttttctccttgattcgaatcttttgtgctcgaaatcacactctttttgtttactctggcag-----------------
| || || ||  |||||||||| || || |||||||| || || ||||| || ||||||||||| ||||| ||||| || |||||  ||||   |||||   | ||  ||| ||||||  |  ||   |  |   |   ||||  |  |  |||| | |  |   | || |  ||                  
GCGGGTACGACGTGGAGGAGAAGGCGGCGAGAGCCTACGACCTGGCGGCGCTCAAGTACTGGGGCCCTTCCACGCACATCAACTTCCCGgtaaaatattctctctctcgtaacattttggttttt---tttaccgtggcgtgcatggcaggacacgcatggtaaat-ctgtaacaatagatacaatacaatgg

upper sequence: GLYMA04G05080.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G37750.1 (Arabidopsis thaliana), 5'ss of exon 5
GGGGTTATGATATGGAGGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGgtatatttcatttcgtgtagcatttttctccttgattcgaatcttttgtgctcgaaat-cacactctttttgtttactctggcag
| ||||||||||||||||||||||||||  |||| |||||||| || || || ||||||||||| || || || || |  || || || ||| ||    |||  |  |   | | |||| ||||      | || | || |  |  |  | | | |  |  |  |   | | ||
GAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATCTTGCTGCACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCTgtaaatcatcttttctaaactttatgtctctttgacct---tgttgtatgatttatttatataatatgataatggatatttgaag

upper sequence: GLYMA04G05080.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g08610.t01 (Vitis vinifera), 5'ss of exon 5
GGGGTTATGATATGGAGGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGgtatatttcatttcgtgtagcatttttctccttgattcgaatcttttgtgctcgaaatcacactctttttgtttactctggcag
|||| ||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||||||||||| || ||||| |||||  ||||||  ||||   | || |  | | |     |  ||| |   |||   | ||  ||| | || |  || || |   |  | |||
GGGGGTATGATATGGAAGAGAAAGCTGCAAGAGCTTACGATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCGgtatgattcaacac-tggattaatctctcaatccattggtgacttaaattcttaaaa-cgcaattcttctgctc-tttggacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4307200|gb|AI444013.1|AI444013
EST:     ATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCG                         ATAGAGAATTACCAAGTTCAACTTGAGGAAATGAAGAACATGAGCAGACAG
genomic: ATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGgtatatttca ... actctggcagATAGAGAATTACCAAGTTCAACTTGAGGAAATGAAGAACATGAGCAGACAG