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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATACTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgttaatttttttgagttattgtttatagttttataggattccattgaagtaattaccttctatagttttggctcggagataatttataggtataggattaattgatacttgaatgttgtttcattag

Basic information

species Glycine max
transcript GLYMA04G03230.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03230.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G171354_T04 (Zea mays), 5'ss of exon 1
ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATACTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgttaatttttttgagttattgtttatagttttataggattccattgaagtaattaccttctatagttttggctcggagataatttataggtataggattaattgatacttgaatgttgtttcattag
 || | ||||||||||||  | ||||||||||| |||||   | |||| |||||||| |||||  | ||||||||||||||||||||  | ||||| |||||| ||     ||    ||||  |      | ||   | |    ||  ||   | |  |||   ||||  || ||     |    ||                                              
TCTATACCAAATGTTTATTGTCAATGCTGGTCCGGGTTTCCGGCTACTATGGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACATgtaagt-----ttccactgaggcacaagcgacagaacttttttcttg-ataacattgcttaatgtctaaggtattcttatgtttttag---------------------------------------------

upper sequence: GLYMA04G03230.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G355610_T01 (Zea mays), 5'ss of exon 7
ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATACTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgttaatttttttgagttattgtttatagtttta-taggattccattgaagtaattaccttctatagttttggctcggagataatttataggtataggattaattgatacttgaatgttgtttcattag
| | ||||| |||| ||| |||||||| || |  || || |||||  | |||| |||  | ||| |||| |||||||| |||||| |||| |||||||||||||||  |   ||| || ||   |||  | |   |||| ||  ||   ||  |  || |   |   ||  | |            |  |||  ||                                      
ATTGTGCCAGATGTATATAATTAATGCGGGCCAAGGCTTCAAGATGTTATGGAGCACAATAAAATCATTCCTTGATCCAAAAACTGCTTCCAAGATTCATgtatgtagtg-ctttgttaagcatttgcatctttctttagtaatatgatatccagatagtagtcagttagtgatcctttctcattttcttttgaag--------------------------------------

upper sequence: GLYMA04G03230.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 5
ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATACTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgttaatttttttgagttattgtttatagttttataggattccattgaagtaattaccttctatagttttggctcggagataatttataggtataggattaattgatacttgaatgttgtttcattag
|||   ||  ||||||||||| ||||| ||| ||||||||||| |||| |||  |||||||||| | ||||||||||| || |||   || || || ||||||      | ||       ||| || |  ||   ||| ||   ||   |  |   || ||   | |||   | ||    | | |                                                
ACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATACATgta------acttagccgtggtttttatgcatccatttttacactttattgtatagaactaaactgtattaatgtgatctgaatag-----------------------------------------------

upper sequence: GLYMA04G03230.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 6
ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATACTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgttaa----tttttttgagttattgtttatagttttataggattccattgaagtaattacctt-ctatagttttggct-cggagataatttataggtataggattaattgatacttgaatgttgtttcattag
||| ||||||||||||||||||||||||||||| ||||||| | | ||||||||||| ||||| || ||||||||||| ||||| ||||| |||||||||||| ||   ||    || |||| |  | ||     ||   |       ||   | |||||    ||  | || |  | ||  || |  | | || | |||     |||| | |||| |  | |||  ||   |||    
ACTTTGCCAAATGTTTATCATTAATGCTGGTCCAGGTTTTAGGCTGCTCTGGAACACCGTGAAGACTTTTCTTGATCCAAAAACAACTTCCAAGATTCATgtaagttaaaagaagttattttaatctgtttagagtatgatctccctgtttgttagaagtgtacactgtgctgttttctttacttctaacagaagtcata-----aggagtgattgtttttggaaattttcctcag---