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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAGgtcagattatgtttcttttataaattctgtgtgctttgaagtcttcttcattgtaaaatttattttaccttcccttcattctgatgtag

Basic information

species Glycine max
transcript GLYMA04G03180.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03180.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 5
GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAGgtcaga-ttatgtttcttttataa-attctg---tgtgctttga------agtcttcttcattgtaaaatttattttaccttcccttcat-tctgat--gtag
|||||||| ||||| ||||||||||||||||| || ||||| |||||||| |||||||| |||||||||||||| || ||| | ||||||||| |||   ||  | | |   ||| |    ||| ||||||      | | ||   |    |  ||| |    | |||||  ||    |||| |  ||||
GGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAGACATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAGgtcagacttacacttggtgtgttgcattttaagatgtactttgatctgagaatttttccctaaatttaatctgcaatgccttcttttttcctctggtttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405441|gb|EV275255.1|EV275255
EST:     CATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAG                         GTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGT
genomic: CATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAGgtcagattat ... tctgatgtagGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGT
EST: gi|208336740|gb|GE136012.1|GE136012
EST:     CATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAG                         GTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTA
genomic: CATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAGgtcagattat ... tctgatgtagGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTA