1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTCTTGCTTATAAGGAGCCAGAGAAATCCCCAATGTTTCATCTCCTTAGCTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGgttggttaacttgatatctgcatgtttctttaatatattttgtttcaaatcatgatgcttttttctatccatgttaaatatatgattttttttttcctgtggatggtgggtaattgccag
species | Glycine max |
transcript | GLYMA04G03080.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTATATTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTG CACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGGEST: gi|192298544|gb|FG989220.1|FG989220
genomic: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGgttggttaac ... taattgccagCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGG
EST: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTG CACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAEST: gi|208275174|gb|GE067994.1|GE067994
genomic: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGgttggttaac ... taattgccagCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACA
EST: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTG CACACTTGAATCTTCCCAGTTACACAGCAATGGAGGGGCTAATACAGCAGGEST: gi|254325124|gb|GR834549.1|GR834549
genomic: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGgttggttaac ... taattgccagCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGG
EST: CTTAGAGTATCGGCAACAGG-TGCAGATAG-TTGAATCGAGCCATTCTTG CACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGGEST: gi|209723413|gb|BW679947.1|BW679947
genomic: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGgttggttaac ... taattgccagCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGG
EST: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTG CACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGGEST: gi|254325123|gb|GR834548.1|GR834548
genomic: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGgttggttaac ... taattgccagCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGG
EST: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTG CACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGGEST: gi|27808942|gb|CB063364.1|CB063364
genomic: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGgttggttaac ... taattgccagCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGG
EST: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTG CACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGGEST: gi|13788314|gb|BG650906.1|BG650906
genomic: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGgttggttaac ... taattgccagCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGG
EST: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTG CACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGG
genomic: CTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGgttggttaac ... taattgccagCACACTTGAATCTTCCCAGTTACACAGCAATGGAGAGGCTAATACAGCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTTGCTTATAAGGAGCCAGAGAAATCCCCAATGTTTCATCTCCTTAGCTTAGAGTATCGGCAACAGGTTGCAGATAGTTTGAATCGAGCCATTCTTGgttggttaacttgatatctgcatgtttctttaatatattttgtttcaaatcatgatgcttttttctatccatgttaaatatatgattttttttttcctgtggatggtgggtaattgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT