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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCGGGAAGATAAGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaataccataaattttcttacccctacccatttcttttgctaaagggtggaggtgtgagttcttaattcagaaattgcattgatctcacattgatgtatgttttcactttggttgaag

Basic information

species Glycine max
transcript GLYMA04G02540.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G02540.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g14670.t01 (Vitis vinifera), 5'ss of exon 5
ATCTTCGGGAAGATAAGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaataccataaattttcttacccctacccatttcttttgctaaagggtggaggtgtgagttcttaattcagaaattgcattgatctcacattgatgtatgttttcactttggttgaag
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ATCTTCGGGATGATAAGCAATTCTTTGTAGACCACCCTGGTGCAGTGCCTATTACTACAGCTCAGgtaaggatcatggccgcttaaccagtaaagaaatttccttcttgttttttttttggggg--ggatttttagtatacttgttc--ttaatcttttgttc-----tggccttgcct---ctaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173197|gb|HO020181.1|HO020181
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|21255617|gb|BQ452505.1|BQ452505
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|16349155|gb|BI974750.1|BI974750
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|20449761|gb|BQ253885.1|BQ253885
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|16347027|gb|BI972622.1|BI972622
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|298171524|gb|HO016556.1|HO016556
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|209720783|gb|BW657757.1|BW657757
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGT