Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTATGAATTGTTTAGGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcatctttggtgatgtgttcttgtttataggaagaatctgtaaagaattgttctcaacagcccaaggaaagcggaatatgtttttattggtctgtaatgaattggtctcattgactttttgtttatgttgtcag

Basic information

species Glycine max
transcript GLYMA04G01840.8
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01840.8 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0122g01190.t01 (Vitis vinifera), 5'ss of exon 6
AATTTTATGAATTGTTTAGGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcatctttggtgatgtgttcttgtttataggaagaatctgtaaagaattgttctcaacagcccaaggaaagcggaatatgtttttattggtctgtaatgaattg-gtctcattgactttttgtttatgttgtcag
                   || || || || ||||| || ||  | || ||  ||||||| || |||||||||||||||| ||| |||||||| ||||||||   ||   ||||     | || || |          || ||      | ||| |||||   || ||            ||  ||||| | ||| || |||   ||||   ||| ||| | |  |               
-------------------GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgt--attttactttaaatgtatgctcct----------agtattcaagtaaaatggttctt--catcc------------aaattgtttctcttgttcagtataaaattatatctgattcattcgt---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207840265|gb|GD813104.1|GD813104
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193353946|gb|FK322024.1|FK322024
EST:     TGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: TGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|192328173|gb|FK022867.1|FK022867
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207815801|gb|GD787006.1|GD787006
EST:     CTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: CTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207706400|gb|GD687018.1|GD687018
EST:     TGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: TGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|208219062|gb|GE015792.1|GE015792
EST:     GTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAAGAAGAATCTG
genomic: GTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAA-GAAGAATCTG
EST: gi|207833693|gb|GD807610.1|GD807610
EST:     ACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: ACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|5677177|gb|AI938307.1|AI938307
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193310302|gb|FK274128.1|FK274128
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGTAAGAATCTGAGAAGTCCGTATC
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAG-AAGAATCTGAGAAGTCTGTATC
EST: gi|207842828|gb|GD816024.1|GD816024
EST:     AAAGGAAAGNGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193509522|gb|FK471130.1|FK471130
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207837887|gb|GD813329.1|GD813329
EST:     TAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: TAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193385381|gb|FK350687.1|FK350687
EST:     AAAGG-AAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|6071409|gb|AW100796.1|AW100796
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|208252071|gb|GE049290.1|GE049290
EST:     AAAGG-AAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GC-GAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207796068|gb|GD769305.1|GD769305
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|208264914|gb|GE063450.1|GE063450
EST:     GAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: GAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|208126990|gb|GD926150.1|GD926150
EST:     GAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: GAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207714164|gb|GD694943.1|GD694943
EST:     AGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193665032|gb|FK611706.1|FK611706
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|208111947|gb|GD912381.1|GD912381
EST:     AGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207755383|gb|GD729418.1|GD729418
EST:     GTACGAGAAGAACATGAGAGCTTATAACAAGAAAACAAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATC
genomic: GTACGAGAAGAACATGAGAGCTTATAACAAG-AAAC-AGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATC
EST: gi|7639106|gb|AW733436.1|AW733436
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|214006236|gb|DB989505.1|DB989505
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATTTTAAGAAACAG                         GCGGAAGATCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193698958|gb|FK641233.1|FK641233
EST:     AGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207694525|gb|GD678708.1|GD678708
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAG                         GCGGAAGGTCCTACTAGGTGGGGATGAAGAA
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACT-GGTGGGGATGAAGAA
EST: gi|208093265|gb|GD895216.1|GD895216
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|22929644|gb|BU546783.1|BU546783
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|13791429|gb|BG654020.1|BG654020
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193632584|gb|FK580516.1|FK580516
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGGGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|21256663|gb|BQ453551.1|BQ453551
EST:     AAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193347508|gb|FK312274.1|FK312274
EST:     ATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATC
genomic: ATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATC
EST: gi|193372223|gb|FK335440.1|FK335440
EST:     ATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: ATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193381153|gb|FK348354.1|FK348354
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCCGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|208080576|gb|GD875014.1|GD875014
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193335490|gb|FK300190.1|FK300190
EST:     CGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATC
genomic: CGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAA-GGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATC
EST: gi|193656324|gb|FK603692.1|FK603692
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207716057|gb|GD698427.1|GD698427
EST:     GAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: GAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|21993807|gb|BQ785335.1|BQ785335
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207824372|gb|GD795860.1|GD795860
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGCCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|105631896|gb|DW246230.1|DW246230
EST:     ACGAGAAGACCATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: ACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193343104|gb|FK305698.1|FK305698
EST:     CGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: CGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193349046|gb|FK315280.1|FK315280
EST:     TGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: TGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|208110333|gb|GD911789.1|GD911789
EST:     AAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|31309231|gb|CD394434.1|CD394434
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207796834|gb|GD768896.1|GD768896
EST:     GGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: GGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|208078996|gb|GD876612.1|GD876612
EST:     AACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTAT
genomic: AACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTAT
EST: gi|13791012|gb|BG653603.1|BG653603
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193694905|gb|FK632975.1|FK632975
EST:     AACAAGAAGCAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207845337|gb|GD814934.1|GD814934
EST:     GAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: GAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193619919|gb|FK567156.1|FK567156
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTCGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATC
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACT-GGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATC
EST: gi|214006650|gb|DB986401.1|DB986401
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTAGCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193687414|gb|FK633959.1|FK633959
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193371946|gb|FK334169.1|FK334169
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|31307136|gb|CD392339.1|CD392339
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACTAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207840857|gb|GD810154.1|GD810154
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCCGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193729351|gb|FK667265.1|FK667265
EST:     AAGGAAAGTTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAGGAAAG-TGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207769704|gb|GD741290.1|GD741290
EST:     AGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|208224913|gb|GE026298.1|GE026298
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATG
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATG
EST: gi|208250958|gb|GE050067.1|GE050067
EST:     AAAGGAAAGTGGAGTACGAGAAGGACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|15000980|gb|BI321794.1|BI321794
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193723362|gb|FK661410.1|FK661410
EST:     AAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATC
genomic: AAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAAC-AAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATC
EST: gi|208271393|gb|GE072599.1|GE072599
EST:     GGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: GGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207758058|gb|GD727782.1|GD727782
EST:     AGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|8402629|gb|BE058263.1|BE058263
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207802749|gb|GD772646.1|GD772646
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTG
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTG
EST: gi|9205416|gb|BE331640.1|BE331640
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193716839|gb|FK649413.1|FK649413
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193655955|gb|FK606627.1|FK606627
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193304698|gb|FK272183.1|FK272183
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207829966|gb|GD801882.1|GD801882
EST:     CTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: CTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|193681755|gb|FK622461.1|FK622461
EST:     AACAAGAAACAG                         GCGGTAAGGTTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTAT
genomic: AACAAGAAACAGgttggttcat ... atgttgtcagGCGG-AAGG-TCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTAT
EST: gi|208282518|gb|GE076472.1|GE076472
EST:     AAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GC-GAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|31475100|gb|CD417128.1|CD417128
EST:     AAAGGAAACTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATTTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|9984278|gb|BE658386.1|BE658386
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|207682257|gb|GD667162.1|GD667162
EST:     AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTACAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
EST: gi|208204683|gb|GE007866.1|GE007866
EST:     AGAGCTTATAACAAGAAACAG                         GCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT
genomic: AGAGCTTATAACAAGAAACAGgttggttcat ... atgttgtcagGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTTTATGAATTGTTTAGGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcatctttggtgatgtgttcttgtttataggaagaatctgtaaagaattgttctcaacagcccaaggaaagcggaatatgtttttattggtctgtaatgaattggtctcattgactttttgtttatgttgtcag

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA