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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGAAATGGAAGGCTTGGGAAGCAGAAACATCTTCCCTGGAGTATCAATTTACAAATGgtaattcttattgcaatttgtgaaagctcttaatacatataaatatatacaaaaatataacatacaatggagctttgtcttatgtattttcatgattaacgcag

Basic information

species Glycine max
transcript GLYMA04G01730.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01730.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0122g00930.t01 (Vitis vinifera), 5'ss of exon 5
ATGAAGAAATGGAAGGCTTGGGAAGCAGAAACATCTTCCCTGGAGTATCAATTTACAAATGgtaattcttattgcaatttgtgaaagctcttaatacatataaatatatacaaaaatataacatacaatggagctttgtcttatgtattttcatgattaacgcag------
||||||||||||||| |||||||  | || ||||||||| |||| ||| |||| ||||||||||||  ||    || | | | ||  ||   |     | | |    || |||  || | |      ||||  |     | | || || || |    |||    |      
ATGAAGAAATGGAAGTCTTGGGAGTCGGAGACATCTTCCTTGGAATATGAATTCACAAATGgtaatctttt---cattcttttaa--cttccatcgtgtttga----attcaaggatgtgaagggggatggttcaggaccctgtg-atcttgacttctaaacttgttccca