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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACTCCATTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCCATgtaaacctttttagtgtgctgatcaatttgaaccaaggttgattttcatttaagcatggacactgaacatgttaatgatttattgaccag

Basic information

species Glycine max
transcript GLYMA04G01230.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01230.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0038g04480.t01 (Vitis vinifera), 5'ss of exon 6
ACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACTCCATTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCCATgtaaacctttttagtgtgctgatcaatttgaaccaaggttgattttcatttaagcatggacactgaacatgttaatgattt-attg-accag
|||   ||||||||||||||| ||||||||||||||||| ||||| || |||||  |  | || || ||||| || ||||||||||| ||||| || ||||| | | |||   || | ||| | |  || ||| |    |  |||| ||  ||  |    |||| |||    ||| | ||| |||| |||||
ACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTCATgtgaccattt---gtcttctgtttaccttaaactattacttgttttgatcaaacaaaatccacttaaccatctaacggttttattgtaccag