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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTTATTACCCGATTGCAGAAGATTGATGGTGATAATTACCCTGAGgtgtgttgtcttgttccctgtcacgtgtaattaattgctattttcttttggaatgctggttttgtcagttattgcaaattcgaaagatgatatactatggtaacagtggactgatgattcttttattaatgatacag

Basic information

species Glycine max
transcript GLYMA04G01220.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01220.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 6
GGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTTATTACCCGATTGCAGAAGATTGATGGTGATAATTACCCTGAGgtgtgttgtcttgttccctgtcacgtg-taattaattgctattttcttttggaatgctggttttgtcagttattgcaaattcgaaagatgatatactatggtaacagtggactgatgattcttttattaatgatacag
||  |||||||| | |||||| |||| ||||| || ||||  ||  |||||||||||||||| ||||||||||||||||| |     ||| |||  | | || || |||   || | | |  ||  ||  ||   || | | |     |     |  | |    |||  |  ||| |  |||| |  | | |                        
GGTTTTAAGAACCTAACAAAGGCTGCACGGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacctttttctgt-tgacatgataagctatagttgtaatccatttcaaaattgatataggtgactga-atatgtgccctggatcttgaactctcttaactgctg-cag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306575|gb|FG996237.1|FG996237
EST:     GGGAACTTATTACCCGATTGCAGAAGATTGATGGTGATAATTACCC-CA-                         ACTCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTG
genomic: GGGAACTTATTACCCGATTGCAGAAGATTGATGGTGATAATTACCCTGAGgtgtgttgtc ... aatgatacagACTCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTG
EST: gi|11274643|gb|BF324980.1|BF324980
EST:     GGGAACTCATTACCCGATTGCAGAAGATTGATGGTGACAATTACCCTGAG                         ACTCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTG
genomic: GGGAACTTATTACCCGATTGCAGAAGATTGATGGTGATAATTACCCTGAGgtgtgttgtc ... aatgatacagACTCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTG
EST: gi|151395356|gb|EV265227.1|EV265227
EST:     GGGAACTTATTACCCGATTGCAGAAGATTGATGGTGATAATTACCCTGAG                         ACTCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTG
genomic: GGGAACTTATTACCCGATTGCAGAAGATTGATGGTGATAATTACCCTGAGgtgtgttgtc ... aatgatacagACTCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTG