Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTCGTTGGGCTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttccaatcagtaacttttgatgttaaaatattccatgttgagagaagaaggggtattctagtgttatgttgtctgcttgtctgactgaacttcattccatcatttcag

Basic information

species Glycine max
transcript GLYMA03G42370.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 5
TTTGTCGTTGGGCTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttccaatcagtaacttttgatgttaaaatattccatgttgagagaagaaggggtattctagtgttatgttgtctgcttgtctgactgaacttcattccatcatttcag
||||| ||||||||||| ||||||||||| || || || || || ||||| |||||||||||||| ||| ||          |  | | ||| ||||    || |  |      |    | ||| || || |   |  | ||  ||    | | |  || ||    |   ||   
TTTGTTGTTGGGCTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttcatattcatctctccgtttttacaataa---atttccact----accatgcattttaatgctgc-tcctttg--tgctgtaataatttttatattttggatt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208278974|gb|GE076611.1|GE076611
EST:     ACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: ACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|213602675|gb|DB956611.1|DB956611
EST:     CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|213589227|gb|DB957759.1|DB957759
EST:     CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|209702899|gb|BW667434.1|BW667434
EST:     CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|193314171|gb|FK280098.1|FK280098
EST:     CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|208215664|gb|GE008516.1|GE008516
EST:     CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTG
genomic: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTG
EST: gi|208127872|gb|GD924022.1|GD924022
EST:     TGGGCGACAAAGTTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: TGGGCGACAAAG-TTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|151405667|gb|EV275481.1|EV275481
EST:     CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|192301329|gb|FG990219.1|FG990219
EST:     CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|213600299|gb|DB970277.1|DB970277
EST:     CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGN                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA