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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCATCTTTACAAGGAGAACAAAGATACCCACGAAGCCTTGGGGGTTATTGGAAATATGCTCAGTGTCCAGgtctgtcttgttcattgttggatatgttctgtaggctttctgatggaccgaaagtgaagttttgtttgctgatgattcattcagttcttgtatatgagga...

Basic information

species Glycine max
transcript GLYMA03G40600.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40600.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g56620.1 (Oryza sativa), 5'ss of exon 4
GTTTCATCTTTACAAGGAGAACAAAGATACCCACGAAGCCTTGGGGGTTATTGGAAATATGCTCAGTGTCCAGgtctgtcttgttcattgttggat--atgt-tctgtaggctttctgatggaccgaaagtgaa---gttttgtttgctgatgattcattcagttcttgtatatgagga-
|||||||||||||||||||||||| || ||||| || ||  | ||    || || || |||||  |  | |||||   | |||||   ||||  ||  | || | || ||| | ||   |     |    | ||    ||  | |   || | ||| |||     ||    |      | 
GTTTCATCTTTACAAGGAGAACAAGGACACCCAAGAGGCACTAGGAAAGATAGGCAAGATGCTAGGGCTTCAGgtgcatgttgtttgctgtttcattgaagtatttgcagggtgtcctgtttttagtttataaattcattcagctgtttgctaattgattggtgactaaacttcccacag

upper sequence: GLYMA03G40600.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G04820.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTTCATCTTTACAAGGAGAACAAAGATACCCACGAAGCCTTGGGGGTTATTGGAAATATGCTCAGTGTCCAGgtctgtcttgttcattgttggatatgt-tctgtaggctttctgatggaccgaaagtgaagttttgttt----gctgatgattcattcagttcttgtatatgagga
||| |||||||||||||||||||||||||| || || ||||||||  | |||||||| |||||  | || ||||| | ||   |    |  |    || | |     |||| | | ||     |  | || | |||  ||     ||||   ||| |    ||| ||| || |   | 
GTTCCATCTTTACAAGGAGAACAAAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGgtgtttcccatcttcttctatccatctataaaggggctgttttatctctagccattgtactttccttgataagctgtgtattgaaatggtttttgaatttacag-

upper sequence: GLYMA03G40600.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0030g01840.t01 (Vitis vinifera), 5'ss of exon 5
GTTTCATCTTTACAAGGAGAACAAAGATACCCACGAAGCCTTGGGGGTTATTGGAAATATGCTCAGTGTCCAGgtctgtcttgttcattgttggatat--gttctgtaggctttctgatggaccgaaagtga-agttttgtttgctgatgattcattcagttcttgtatatgagga--------------------------------------------------------------------------------------------------
|||||||||||||||||||||||| |||||||| || ||| | ||  | |||||||| |||||  |  |||||||   || ||   | |  | |  ||   ||    |   ||| ||||     | | || | | |   | | || | ||  |   | ||| | | ||  ||  |                                                                                                   
GTTTCATCTTTACAAGGAGAACAAGGATACCCAGGAGGCCATAGGATTGATTGGAAAGATGCTGGGCATCCAGgtaattcatgggaaattatagccattcatttccaaatatttgtgatcctttgtaggtaataatggggatggcaggtggctgtattagt-catatagctgttgttggatgttctatcatattttgaacagtttgtatcggttgtatatgtagaagtgttaaatatcttttatttacattgattgatgtttctgtttcgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205460|gb|BU964713.1|BU964713
EST:     AAGATACCCACGAAGCCTTGGGGGTTATTGGAAATATGCTCAGTGTCCAG                         CCAAAATCATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACC
genomic: AAGATACCCACGAAGCCTTGGGGGTTATTGGAAATATGCTCAGTGTCCAGgtctgtcttg ... taactgacagCCAAAATCATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACC
EST: gi|208046299|gb|GD848687.1|GD848687
EST:     AAGATACCCACGAAGCCTTGGGGGTTATTGGAAATATGCTCAGTGTCCAG                         CCAAAATCATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACC
genomic: AAGATACCCACGAAGCCTTGGGGGTTATTGGAAATATGCTCAGTGTCCAGgtctgtcttg ... taactgacagCCAAAATCATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACC