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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGTTTGGCAGAGCTGGTTTGTATATACAACGAGCTTCGTGAAATTGGAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGgtattatctggggctttttgagtaagcttgattattatcagtgaacaaaccataaatacaaaatcacttttgtttagttgaaataagacgagatagaatg...

Basic information

species Glycine max
transcript GLYMA03G40000.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180727|gb|HO022166.1|HO022166
EST:     GAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAG                         GCTACTCTACGCAGTCTCT
genomic: GAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGgtattatctg ... tgatttgcagGCTACTCTACGCAGTCTCT
EST: gi|213615160|gb|DB964968.1|DB964968
EST:     AAAGGCACCACCTGTTATTGATGCCGCAGAACTTNCA-CAAGATCCTGAG                         GCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGC
genomic: AAAGGCACCACCTGTTATTGATGCCGCAGAACTT-CAACAAGATCCTGAGgtattatctg ... tgatttgcagGCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGC
EST: gi|192301788|gb|FG997674.1|FG997674
EST:     GAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAG                         GCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCA
genomic: GAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGgtattatctg ... tgatttgcagGCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCA
EST: gi|213614510|gb|DB969115.1|DB969115
EST:     GAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAG                         GCTACTCTACGCAGTCTCTGTAATGATTTGGNAGATTCCCTTTTCA-TCTG
genomic: GAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGgtattatctg ... tgatttgcagGCTACTCTACGCAGTCTCTGTAATGATTTGG-AGATTCC-TTTTCAATCTG
EST: gi|298170197|gb|HO018821.1|HO018821
EST:     GAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAG                         GCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCA
genomic: GAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGgtattatctg ... tgatttgcagGCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCA
EST: gi|151396136|gb|EV266013.1|EV266013
EST:     GAAAGGCACCGCCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAG                         GCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCA
genomic: GAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGgtattatctg ... tgatttgcagGCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCA