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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACACACAGTGGCTGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTTTCAGCAGGGACTCCTGGTAAACGCTTTATGATGCCACATGCTAAAGgtacaatttggatttaactttgtggctttgttcctttaattccttacagctgtaatagttttctattgatttcggtttcag

Basic information

species Glycine max
transcript GLYMA03G39570.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39570.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G09130.3 (Arabidopsis thaliana), 5'ss of exon 5
ATACACACAGTGGCTGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTTTCAGCAGGGACTCCTGGTAAACGCTTTATGATGCCACATGCTAAAGgtaca-atttggatttaactttgtggctttgttcctttaattccttacagctgtaatagtt--ttctattgatt---tcggtttcag
 |||| |||||   ||| ||| | || |||||||| |||||| |  ||||||| || || ||    |||||||| ||||||||||||||||| ||||||| | | || || |  | | ||     || |     | |    | | |     ||    |  | |  ||||||   |  ||  |||
GTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTACTTTCTGCGGGAACCAAGGGTAAACGGTTTATGATGCCACATGCCAAAGgtatagacttcgactgcattctggccgcttctatggctcaccattgataatcagaacctctcatacgtttgattcattatgtcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402798|gb|EV272611.1|EV272611
EST:     ACTTTCAGCAGGGACTCCTGGTAAACGCTTTATGATGCCACATGCTAAAG                         CCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTG
genomic: ACTTTCAGCAGGGACTCCTGGTAAACGCTTTATGATGCCACATGCTAAAGgtacaatttg ... tcggtttcagCCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTG