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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCCAATGTGACATATGATGATTCAATGAATCTGAGAAATATTCTCTGGCTGGCTCCAATGCCTGGCGATTCTGGTGAATCTTGGGTGGCACCAGgtatcttcactaaaattaccatatctgtataaagttcaaatgttttttcatatgtattgttgtgatttgggacctttcttatcccttagagtgatatatt...

Basic information

species Glycine max
transcript GLYMA03G39550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39550.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0060g02190.t01 (Vitis vinifera), 5'ss of exon 5
GGTCCAATGTGACATATGATGATTCAATGAATCTGAGAAATATTCTCTGGCTGGCTCCAATGCCTGGCGATTCTGGTGAATCTTGGGTGGCACCAGgtatcttcactaaaattaccatatctgtataaagttcaaatgttttttcatatgtattgttgtgatttgggacctttcttatcccttagagtgatatatt----------
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GGTCCAATGTGGCATATGATGATTCTATGAACTTGCGGAACATTCTCTGGCTTGCTCCATTACCAAGCAATTCCTCTAAAGGTTGGGTGGCTCCTGgtatgtctcccaac----ccacatctgaagcaa---caaat--tgctatgtttatcaaaccacaaacaaggatttcactgaacccattgtac-atatgctgtttaattct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31306509|gb|CD391712.1|CD391712
EST:     CTGGCTGGCTCCAATGCCTGGCGATTCTGGTGAATCTTGGGTGGCACCAG                         GTGTTCTGGTAGTGCTGGATGCTCGTCCTGATGGGATCATATATAGAGACC
genomic: CTGGCTGGCTCCAATGCCTGGCGATTCTGGTGAATCTTGGGTGGCACCAGgtatcttcac ... aattgcacagGTGTTCTGGTAGTGCTGGATGCTCGTCCTGATGGGATCATATATAGAGACC