Sequence
atgc intronic sequence ATGC exonic sequenceTTCTGGAACATCTGAAAACACTAAGGTGATAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTACTTGGTTCTCCCAGTGATGATGTCCGTGAACAGgtacatttcatgtaccttgtcatatatttgtttatcaataaaaattatacacttaaaatgagaacaaattactttttatgttgtttgacccaaaaatgtg...
Basic information
species | Glycine max |
transcript | GLYMA03G39210.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G39210.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
TTCTGGAACATCTGAAAACACTAAGGTGATAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTACTTGGTTCTCCCAGTGATGATGTCCGTGAACAGgtacatttcatgtaccttgtcatatatttgt-ttatcaataaaaatt--atac-acttaaaatgagaacaa----------attactttttatgttgtttgacccaaaaatgtg-
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ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgat-catctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
upper sequence: GLYMA03G39210.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 4
TTCTGGAACATCTGAAAACACTAAGGTGATAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTACTTGGTTCTCCCAGTGATGATGTCCGTGAACAGgtacat---ttcatgtaccttgtcatatatttgtttatcaataaaaattatacacttaaaatgagaacaaattactttttatgttgtttgacccaaaaatgtg
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TTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgtacatattttgaagaacattcctacctgctaatatagtttttagtttagtttgtctttttaattattgcatttttttttggtatgcttgtttggaatgt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13252252|gb|BG363155.1|BG363155EST: CAATTTTTGTAAAGCTACTTGGTTCTCCCAGTGATGATGTCCGTGAACAG GCTGTTTGGGCATTAGGAAATGTTGCTGGAGATTCACCTAGATGCCGTGAT
genomic: CAATTTTTGTAAAGCTACTTGGTTCTCCCAGTGATGATGTCCGTGAACAGgtacatttca ... ggacaatcagGCTGTTTGGGCATTAGGAAATGTTGCTGGAGATTCACCTAGATGCCGTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTGGAACATCTGAAAACACTAAGGTGATAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTACTTGGTTCTCCCAGTGATGATGTCCGTGAACAGgtacatttcatgtaccttgtcatatatttgtttatcaataaaaattatacacttaaaatgagaacaaattactttttatgttgtttgacccaaaaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaaa