1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCCAGATAACTTTGATGAGGTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatagattaaaccatagagatctgtcaaaactttattatatagttagatttttttttttcattttcgtttttttaatattgtccttgataaatttaattgtgtcttccag
species | Glycine max |
transcript | GLYMA03G39130.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGCGGTCATTGCAAGGCCCTTGCCCCTEST: gi|192297309|gb|FG992403.1|FG992403
genomic: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGCGGTCATTGCAAGGCCCTTGCCCCT
EST: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGCGGTCATTGCAAGGCCCTTGCCCCTEST: gi|193704960|gb|FK643960.1|FK643960
genomic: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGCGGTCATTGCAAGGCCCTTGCCCCT
EST: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGCGGTCATTGCAAGGCCCTTGCCCCTEST: gi|207682534|gb|GD664863.1|GD664863
genomic: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGCGGTCATTGCAAGGCCCTTGCCCCT
EST: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGCGGTCATTGCAAGGCCCTTGCCCCEST: gi|193461347|gb|FK429292.1|FK429292
genomic: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGCGGTCATTGCAAGGCCCTTGCCCC
EST: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGCGGTCATTGCAAGGCCCTTGCCCCTEST: gi|208145937|gb|GD943576.1|GD943576
genomic: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGCGGTCATTGCAAGGCCCTTGCCCCT
EST: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGCGGTCATTGCAAGGCCCTTGCCCCTEST: gi|208331009|gb|GE128558.1|GE128558
genomic: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGCGGTCATTGCAAGGCCCTTGCCCCT
EST: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGCGGTCATTGCAAGGCCCTTGCCC-TEST: gi|193357431|gb|FK320137.1|FK320137
genomic: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGCGGTCATTGCAAGGCCCTTGCCCCT
EST: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGCGGTCATTGCAAGGCCCTTGCCCCT
genomic: GTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGCGGTCATTGCAAGGCCCTTGCCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCCAGATAACTTTGATGAGGTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatagattaaaccatagagatctgtcaaaactttattatatagttagatttttttttttcattttcgtttttttaatattgtccttgataaatttaattgtgtcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA